comparison seurat_run_tsne.xml @ 5:8d9ceaec2c7f draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"

4:2d294978b152

<tool id="seurat_run_tsne" name="Seurat RunTSNE" version="@SEURAT_VERSION@+galaxy0">
    <description>run t-SNE dimensionality reduction</description>
    <macros>
        <import>seurat_macros.xml</import>
    </macros>
    <expand macro="requirements" />

        <data name="output_embed" format="csv" from_work_dir="output_embed" label="${tool.name} on ${on_string}: Seurat Embeddings"/>
    </outputs>

    <tests>
        <test>
            <param name="rds_seurat_file" ftype="rdata" value="pca_seurat.rds"/>
            <output name="rds_seurat_file" ftype="rdata" value="tsne_seurat.rds" compare="sim_size" delta="1000000" />
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark

5:8d9ceaec2c7f

<tool id="seurat_run_tsne" name="Seurat RunTSNE" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
    <description>run t-SNE dimensionality reduction</description>
    <macros>
        <import>seurat_macros.xml</import>
    </macros>
    <expand macro="requirements" />

        <data name="output_embed" format="csv" from_work_dir="output_embed" label="${tool.name} on ${on_string}: Seurat Embeddings"/>
    </outputs>

    <tests>
        <test>
            <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-clusters.rds"/>
            <output name="rds_seurat_file" ftype="rdata" >
              <assert_contents>
                <has_size value="5067150" delta="200000"/>
              </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark