Mercurial > repos > ebi-gxa > seurat_scale_data
comparison seurat_scale_data.xml @ 5:d2f6eac0ad42 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"
author | ebi-gxa |
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date | Fri, 04 Mar 2022 07:27:57 +0000 |
parents | 4147dc085d45 |
children | 5e9ba303f9e1 |
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4:4147dc085d45 | 5:d2f6eac0ad42 |
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1 <tool id="seurat_scale_data" name="Seurat ScaleData" version="@SEURAT_VERSION@+galaxy0"> | 1 <tool id="seurat_scale_data" name="Seurat ScaleData" profile="18.01" version="@SEURAT_VERSION@+galaxy0"> |
2 <description>scale and center genes</description> | 2 <description>scale and center genes</description> |
3 <macros> | 3 <macros> |
4 <import>seurat_macros.xml</import> | 4 <import>seurat_macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
68 <expand macro="output_files"/> | 68 <expand macro="output_files"/> |
69 </outputs> | 69 </outputs> |
70 | 70 |
71 <tests> | 71 <tests> |
72 <test> | 72 <test> |
73 <param name="rds_seurat_file" ftype="rdata" value="variable_genes_seurat.rds"/> | 73 <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-fvg.rds"/> |
74 <param name="vars_to_regress" value="nCount_RNA" /> | 74 <param name="vars_to_regress" value="nCount_RNA" /> |
75 <param name="use_umi" value="True" /> | 75 <param name="use_umi" value="True" /> |
76 <output name="rds_seurat_file" ftype="rdata" value="scaled_seurat.rds" compare="sim_size" delta="1000000000" /> | 76 <output name="rds_seurat_file" ftype="rdata"> |
77 <assert_contents> | |
78 <has_size value="4233990" delta="200000"/> | |
79 </assert_contents> | |
80 </output> | |
77 </test> | 81 </test> |
78 </tests> | 82 </tests> |
79 <help><![CDATA[ | 83 <help><![CDATA[ |
80 .. class:: infomark | 84 .. class:: infomark |
81 | 85 |