comparison seurat_scale_data.xml @ 5:d2f6eac0ad42 draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"

4:4147dc085d45

<tool id="seurat_scale_data" name="Seurat ScaleData" version="@SEURAT_VERSION@+galaxy0">
    <description>scale and center genes</description>
    <macros>
        <import>seurat_macros.xml</import>
    </macros>
    <expand macro="requirements" />

      <expand macro="output_files"/>
    </outputs>

    <tests>
        <test>
            <param name="rds_seurat_file" ftype="rdata" value="variable_genes_seurat.rds"/>
            <param name="vars_to_regress" value="nCount_RNA" />
            <param name="use_umi" value="True" />
            <output name="rds_seurat_file" ftype="rdata" value="scaled_seurat.rds" compare="sim_size" delta="1000000000" />
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark

5:d2f6eac0ad42

<tool id="seurat_scale_data" name="Seurat ScaleData" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
    <description>scale and center genes</description>
    <macros>
        <import>seurat_macros.xml</import>
    </macros>
    <expand macro="requirements" />

      <expand macro="output_files"/>
    </outputs>

    <tests>
        <test>
            <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-fvg.rds"/>
            <param name="vars_to_regress" value="nCount_RNA" />
            <param name="use_umi" value="True" />
            <output name="rds_seurat_file" ftype="rdata">
              <assert_contents>
                <has_size value="4233990" delta="200000"/>
              </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark