Mercurial > repos > ebi-gxa > suite_scanpy_scripts

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
author ebi-gxa
date Fri, 13 Nov 2020 15:05:16 +0000
parents bbb05a3a538f
children b80d6e362c37
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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8762428ceab3 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 9bf9a6e46a330890be932f60d1d996dd166426c4
ebi-gxa
parents:
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1 <?xml version="1.0" ?>
8762428ceab3 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 9bf9a6e46a330890be932f60d1d996dd166426c4
ebi-gxa
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2 <repositories description="scanpy-scripts, command-line wrappers around Scanpy.">
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a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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3 <repository owner="ebi-gxa" name="scanpy_parameter_iterator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4bb2ca8e2bd3"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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4 <repository owner="ebi-gxa" name="scanpy_plot_trajectory" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e8e54d565c92"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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5 <repository owner="ebi-gxa" name="scanpy_regress_variable" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6acb47a58ac7"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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6 <repository owner="ebi-gxa" name="scanpy_normalise_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="18ce7b88ff5d"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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7 <repository owner="ebi-gxa" name="scanpy_run_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7ee4417b24cc"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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8 <repository owner="ebi-gxa" name="scanpy_integrate_bbknn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="032d52b00b7c"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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9 <repository owner="ebi-gxa" name="scanpy_find_markers" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bfdca1eb4548"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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10 <repository owner="ebi-gxa" name="scanpy_find_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="62d23f5d38f9"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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11 <repository owner="ebi-gxa" name="scanpy_scale_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="33d809001520"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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12 <repository owner="ebi-gxa" name="scanpy_integrate_combat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="27c74c83eae5"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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13 <repository owner="ebi-gxa" name="anndata_ops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="004cd2ccf7fc"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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14 <repository owner="ebi-gxa" name="scanpy_filter_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="228a51c5bc35"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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15 <repository owner="ebi-gxa" name="scanpy_run_fdg" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2ab5f5682507"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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16 <repository owner="ebi-gxa" name="scanpy_run_umap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a5731f913326"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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17 <repository owner="ebi-gxa" name="scanpy_run_dpt" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ea6bea16d0e2"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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18 <repository owner="ebi-gxa" name="scanpy_run_tsne" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5d92e38da1ea"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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19 <repository owner="ebi-gxa" name="scanpy_integrate_mnn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1504334ef569"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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20 <repository owner="ebi-gxa" name="scanpy_integrate_harmony" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="14076b38c3bb"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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21 <repository owner="ebi-gxa" name="scanpy_run_paga" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a9e541954c1c"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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22 <repository owner="ebi-gxa" name="scanpy_plot_embed" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="278dfcba81fd"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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23 <repository owner="ebi-gxa" name="scanpy_run_diffmap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0580285b842e"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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24 <repository owner="ebi-gxa" name="scanpy_compute_graph" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c7a904e3e09b"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
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25 <repository owner="ebi-gxa" name="scanpy_read_10x" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ce87cc7d65ea"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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26 <repository owner="ebi-gxa" name="scanpy_find_variable_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="84711701573e"/>
a4bfc736f592 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 0cba7758ff1591240bdc81d8075fd90b46951c2d-dirty"
ebi-gxa
parents: 34
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27 <repository owner="ebi-gxa" name="scanpy_filter_cells" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="26a98de26847"/>
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8762428ceab3 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 9bf9a6e46a330890be932f60d1d996dd166426c4
ebi-gxa
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28 </repositories>