Mercurial > repos > ebi-gxa > suite_scanpy_scripts

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 044580b6bfcd36a5c1cb9e70b40045eb8f71b7e2-dirty"
author ebi-gxa
date Wed, 30 Sep 2020 15:36:52 +0000
parents 4351d64a79f4
children 7c2c965f3256
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8762428ceab3 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 9bf9a6e46a330890be932f60d1d996dd166426c4
ebi-gxa
parents:
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1 <?xml version="1.0" ?>
8762428ceab3 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 9bf9a6e46a330890be932f60d1d996dd166426c4
ebi-gxa
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2 <repositories description="scanpy-scripts, command-line wrappers around Scanpy.">
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fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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3 <repository owner="ebi-gxa" name="scanpy_integrate_harmony" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="739f68e3cbca"/>
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309a8cad565c "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit e572b5425460d57f1bd13ab6374674c1c6801ab3-dirty"
ebi-gxa
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4 <repository owner="ebi-gxa" name="scanpy_integrate_combat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0752a5c8a9da"/>
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4351d64a79f4 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit fda35ff3ea8609c4bb5e1fd9e58ba70cd5b5a997-dirty"
ebi-gxa
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5 <repository owner="ebi-gxa" name="scanpy_find_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="15e8a4c60418"/>
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fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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6 <repository owner="ebi-gxa" name="scanpy_plot_embed" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f8b5478a9fdf"/>
fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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7 <repository owner="ebi-gxa" name="scanpy_filter_cells" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e05cafd4e2b2"/>
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027e7987d589 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 2db9e8cecb8d373874318e53ec2d4d7a64dd1b24-dirty"
ebi-gxa
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8 <repository owner="ebi-gxa" name="scanpy_filter_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="083418c42b90"/>
027e7987d589 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 2db9e8cecb8d373874318e53ec2d4d7a64dd1b24-dirty"
ebi-gxa
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9 <repository owner="ebi-gxa" name="scanpy_run_fdg" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="885681d258b4"/>
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fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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10 <repository owner="ebi-gxa" name="scanpy_integrate_mnn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dc7fa97154f1"/>
fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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11 <repository owner="ebi-gxa" name="scanpy_normalise_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7852b823ad45"/>
fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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12 <repository owner="ebi-gxa" name="scanpy_run_diffmap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="900b3c31fd3a"/>
fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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13 <repository owner="ebi-gxa" name="scanpy_plot_trajectory" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0cb36b79741e"/>
fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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14 <repository owner="ebi-gxa" name="scanpy_run_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f7ce9ed8a4f3"/>
fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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15 <repository owner="ebi-gxa" name="scanpy_scale_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="29a69127061f"/>
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027e7987d589 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 2db9e8cecb8d373874318e53ec2d4d7a64dd1b24-dirty"
ebi-gxa
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16 <repository owner="ebi-gxa" name="scanpy_run_dpt" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="730d098a9f23"/>
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fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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17 <repository owner="ebi-gxa" name="scanpy_parameter_iterator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fb354a78d4ae"/>
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e3b7dd491857 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 044580b6bfcd36a5c1cb9e70b40045eb8f71b7e2-dirty"
ebi-gxa
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18 <repository owner="ebi-gxa" name="anndata_ops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c09d61ede252"/>
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fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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19 <repository owner="ebi-gxa" name="scanpy_integrate_bbknn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="26805c747e15"/>
fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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20 <repository owner="ebi-gxa" name="scanpy_run_tsne" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9d2b6c6f9e07"/>
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4351d64a79f4 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit fda35ff3ea8609c4bb5e1fd9e58ba70cd5b5a997-dirty"
ebi-gxa
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21 <repository owner="ebi-gxa" name="scanpy_find_markers" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cc776860fae1"/>
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027e7987d589 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 2db9e8cecb8d373874318e53ec2d4d7a64dd1b24-dirty"
ebi-gxa
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22 <repository owner="ebi-gxa" name="scanpy_run_paga" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f6148c49ff8b"/>
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4351d64a79f4 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit fda35ff3ea8609c4bb5e1fd9e58ba70cd5b5a997-dirty"
ebi-gxa
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23 <repository owner="ebi-gxa" name="scanpy_compute_graph" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3cf0177ed87e"/>
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fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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24 <repository owner="ebi-gxa" name="scanpy_find_variable_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5663eb6b965c"/>
fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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25 <repository owner="ebi-gxa" name="scanpy_regress_variable" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="63e18d37228d"/>
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309a8cad565c "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit e572b5425460d57f1bd13ab6374674c1c6801ab3-dirty"
ebi-gxa
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26 <repository owner="ebi-gxa" name="scanpy_read_10x" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="72cf1c8f5870"/>
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fcc5a45a2461 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
ebi-gxa
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27 <repository owner="ebi-gxa" name="scanpy_run_umap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="135e8cacb57e"/>
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8762428ceab3 planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 9bf9a6e46a330890be932f60d1d996dd166426c4
ebi-gxa
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28 </repositories>