Mercurial > repos > ebi-gxa > suite_scanpy_scripts

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c02d457c74016980672e64832e6cad31d703edcd-dirty"
author ebi-gxa
date Tue, 29 Sep 2020 14:12:28 +0000
parents 04d1024e5eb1
children 4351d64a79f4
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28:04d1024e5eb1 29:fcc5a45a2461
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <repositories description="scanpy-scripts, command-line wrappers around Scanpy."> 2 <repositories description="scanpy-scripts, command-line wrappers around Scanpy.">
3 <repository owner="ebi-gxa" name="scanpy_parameter_iterator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fb354a78d4ae"/> 3 <repository owner="ebi-gxa" name="scanpy_integrate_harmony" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="739f68e3cbca"/>
4 <repository owner="ebi-gxa" name="scanpy_plot_trajectory" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0cb36b79741e"/>
5 <repository owner="ebi-gxa" name="scanpy_regress_variable" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="63e18d37228d"/>
6 <repository owner="ebi-gxa" name="scanpy_normalise_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7852b823ad45"/>
7 <repository owner="ebi-gxa" name="scanpy_run_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f7ce9ed8a4f3"/>
8 <repository owner="ebi-gxa" name="scanpy_integrate_bbknn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="26805c747e15"/>
9 <repository owner="ebi-gxa" name="scanpy_find_markers" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fb9bd74c32b0"/>
10 <repository owner="ebi-gxa" name="scanpy_find_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5e68e130fafe"/>
11 <repository owner="ebi-gxa" name="scanpy_scale_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="29a69127061f"/>
12 <repository owner="ebi-gxa" name="scanpy_integrate_combat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0752a5c8a9da"/> 4 <repository owner="ebi-gxa" name="scanpy_integrate_combat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0752a5c8a9da"/>
13 <repository owner="ebi-gxa" name="anndata_ops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a4ad76e3dc4a"/> 5 <repository owner="ebi-gxa" name="scanpy_find_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b45b85d5c7ec"/>
6 <repository owner="ebi-gxa" name="scanpy_plot_embed" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f8b5478a9fdf"/>
7 <repository owner="ebi-gxa" name="scanpy_filter_cells" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e05cafd4e2b2"/>
14 <repository owner="ebi-gxa" name="scanpy_filter_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="083418c42b90"/> 8 <repository owner="ebi-gxa" name="scanpy_filter_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="083418c42b90"/>
15 <repository owner="ebi-gxa" name="scanpy_run_fdg" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="885681d258b4"/> 9 <repository owner="ebi-gxa" name="scanpy_run_fdg" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="885681d258b4"/>
10 <repository owner="ebi-gxa" name="scanpy_integrate_mnn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dc7fa97154f1"/>
11 <repository owner="ebi-gxa" name="scanpy_normalise_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7852b823ad45"/>
12 <repository owner="ebi-gxa" name="scanpy_run_diffmap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="900b3c31fd3a"/>
13 <repository owner="ebi-gxa" name="scanpy_plot_trajectory" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0cb36b79741e"/>
14 <repository owner="ebi-gxa" name="scanpy_run_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f7ce9ed8a4f3"/>
15 <repository owner="ebi-gxa" name="scanpy_scale_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="29a69127061f"/>
16 <repository owner="ebi-gxa" name="scanpy_run_dpt" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="730d098a9f23"/>
17 <repository owner="ebi-gxa" name="scanpy_parameter_iterator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fb354a78d4ae"/>
18 <repository owner="ebi-gxa" name="anndata_ops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a4ad76e3dc4a"/>
19 <repository owner="ebi-gxa" name="scanpy_integrate_bbknn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="26805c747e15"/>
20 <repository owner="ebi-gxa" name="scanpy_run_tsne" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9d2b6c6f9e07"/>
21 <repository owner="ebi-gxa" name="scanpy_find_markers" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fb9bd74c32b0"/>
22 <repository owner="ebi-gxa" name="scanpy_run_paga" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f6148c49ff8b"/>
23 <repository owner="ebi-gxa" name="scanpy_compute_graph" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a57b128ea4f6"/>
24 <repository owner="ebi-gxa" name="scanpy_find_variable_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5663eb6b965c"/>
25 <repository owner="ebi-gxa" name="scanpy_regress_variable" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="63e18d37228d"/>
26 <repository owner="ebi-gxa" name="scanpy_read_10x" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="72cf1c8f5870"/>
16 <repository owner="ebi-gxa" name="scanpy_run_umap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="135e8cacb57e"/> 27 <repository owner="ebi-gxa" name="scanpy_run_umap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="135e8cacb57e"/>
17 <repository owner="ebi-gxa" name="scanpy_run_dpt" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="730d098a9f23"/>
18 <repository owner="ebi-gxa" name="scanpy_run_tsne" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b5e1939cc155"/>
19 <repository owner="ebi-gxa" name="scanpy_integrate_mnn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dc7fa97154f1"/>
20 <repository owner="ebi-gxa" name="scanpy_integrate_harmony" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="739f68e3cbca"/>
21 <repository owner="ebi-gxa" name="scanpy_run_paga" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f6148c49ff8b"/>
22 <repository owner="ebi-gxa" name="scanpy_plot_embed" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f8b5478a9fdf"/>
23 <repository owner="ebi-gxa" name="scanpy_run_diffmap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="900b3c31fd3a"/>
24 <repository owner="ebi-gxa" name="scanpy_compute_graph" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e6c989a9211c"/>
25 <repository owner="ebi-gxa" name="scanpy_read_10x" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="72cf1c8f5870"/>
26 <repository owner="ebi-gxa" name="scanpy_find_variable_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5663eb6b965c"/>
27 <repository owner="ebi-gxa" name="scanpy_filter_cells" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e05cafd4e2b2"/>
28 </repositories> 28 </repositories>