Mercurial > repos > ebi-gxa > suite_scanpy_scripts

changeset 21:3dc687e346a1 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 62f47287c7e8449c59a1f1f454852ddc669b1b1e-dirty"
author ebi-gxa
date Mon, 07 Sep 2020 14:03:31 +0000
parents f007e68ed3c1
children 10a498b5556a
files repository_dependencies.xml
diffstat 1 files changed, 25 insertions(+), 21 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Sun Jun 14 14:04:10 2020 -0400
+++ b/repository_dependencies.xml	Mon Sep 07 14:03:31 2020 +0000
@@ -1,24 +1,28 @@
 <?xml version="1.0" ?>
 <repositories description="scanpy-scripts, command-line wrappers around Scanpy.">
-    <repository changeset_revision="b456d129066d" name="scanpy_find_cluster" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="068c4bf0e0db" name="scanpy_plot_embed" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="da8c130348b6" name="scanpy_filter_cells" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="6953c7e519cd" name="scanpy_filter_genes" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="4722394f6af9" name="scanpy_run_fdg" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="47c747351d62" name="scanpy_normalise_data" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f10df597ed6d" name="scanpy_run_diffmap" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="c99f397434a3" name="scanpy_plot_trajectory" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="aee7b7f9cae3" name="scanpy_run_pca" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="ea8fd43b7e1e" name="scanpy_scale_data" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="1ab80fc6f667" name="scanpy_run_dpt" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="7c4d44c14ceb" name="scanpy_parameter_iterator" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f0a29f4b9be9" name="anndata_ops" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="a597590ccf6c" name="scanpy_run_tsne" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="af9cf232d6c9" name="scanpy_find_markers" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="ed2231b3edff" name="scanpy_run_paga" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="232937b5bb8f" name="scanpy_compute_graph" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="7793c8284aa5" name="scanpy_find_variable_genes" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="9e92447122a6" name="scanpy_regress_variable" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="d92e6f12b790" name="scanpy_read_10x" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="10893b1647ff" name="scanpy_run_umap" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository owner="ebi-gxa" name="scanpy_parameter_iterator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f2410ed604dc"/>
+    <repository owner="ebi-gxa" name="scanpy_plot_trajectory" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c646bd10dcab"/>
+    <repository owner="ebi-gxa" name="scanpy_regress_variable" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e277d77dc6da"/>
+    <repository owner="ebi-gxa" name="scanpy_normalise_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6aa97861fdfd"/>
+    <repository owner="ebi-gxa" name="scanpy_run_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3e7ede8e1c94"/>
+    <repository owner="ebi-gxa" name="scanpy_integrate_bbknn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e6d5b3fed639"/>
+    <repository owner="ebi-gxa" name="scanpy_find_markers" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f6291dbb3afc"/>
+    <repository owner="ebi-gxa" name="scanpy_find_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c46750e2e4a4"/>
+    <repository owner="ebi-gxa" name="scanpy_scale_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="83db723bc0e1"/>
+    <repository owner="ebi-gxa" name="scanpy_integrate_combat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2472523c0c50"/>
+    <repository owner="ebi-gxa" name="anndata_ops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f1a1cf7c0153"/>
+    <repository owner="ebi-gxa" name="scanpy_filter_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fc5b3e76131b"/>
+    <repository owner="ebi-gxa" name="scanpy_run_fdg" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dd27b39c5c12"/>
+    <repository owner="ebi-gxa" name="scanpy_run_umap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f53bb2c1fa07"/>
+    <repository owner="ebi-gxa" name="scanpy_run_dpt" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="820493156c4a"/>
+    <repository owner="ebi-gxa" name="scanpy_run_tsne" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dccd544c21ca"/>
+    <repository owner="ebi-gxa" name="scanpy_integrate_mnn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="873449082a29"/>
+    <repository owner="ebi-gxa" name="scanpy_integrate_harmony" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8b3a52fbb482"/>
+    <repository owner="ebi-gxa" name="scanpy_run_paga" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a1a7650c5cf2"/>
+    <repository owner="ebi-gxa" name="scanpy_plot_embed" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f48cfaa2e515"/>
+    <repository owner="ebi-gxa" name="scanpy_run_diffmap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="26e1a99e3c0f"/>
+    <repository owner="ebi-gxa" name="scanpy_compute_graph" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c78c930e3263"/>
+    <repository owner="ebi-gxa" name="scanpy_read_10x" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5ff50f4a26cd"/>
+    <repository owner="ebi-gxa" name="scanpy_find_variable_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f952b39f0794"/>
+    <repository owner="ebi-gxa" name="scanpy_filter_cells" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cf3fb754ddde"/>
 </repositories>
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