Mercurial > repos > ebi-gxa > suite_scanpy_scripts

changeset 56:bfa23e19a3ef draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 162313dc6ba68efc5003b1bd9b71a40aec87d826-dirty
author ebi-gxa
date Fri, 13 Oct 2023 14:09:41 +0000
parents 80731f05345f
children faa83cff9d02
files repository_dependencies.xml
diffstat 1 files changed, 27 insertions(+), 27 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Sat Jul 15 08:44:55 2023 +0000
+++ b/repository_dependencies.xml	Fri Oct 13 14:09:41 2023 +0000
@@ -1,30 +1,30 @@
 <?xml version="1.0" ?>
 <repositories description="scanpy-scripts, command-line wrappers around Scanpy.">
-    <repository owner="ebi-gxa" name="scanpy_filter_cells" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e9283529cba1"/>
-    <repository owner="ebi-gxa" name="scanpy_filter_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="474a69c47184"/>
-    <repository owner="ebi-gxa" name="scanpy_find_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2ccd9f9e2cd0"/>
-    <repository owner="ebi-gxa" name="scanpy_find_variable_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2861ca3bfe4d"/>
-    <repository owner="ebi-gxa" name="scanpy_integrate_bbknn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1fb88fd7dce5"/>
-    <repository owner="ebi-gxa" name="scanpy_integrate_combat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3c2ff50cef4a"/>
-    <repository owner="ebi-gxa" name="scanpy_integrate_harmony" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3111bcf039dd"/>
-    <repository owner="ebi-gxa" name="scanpy_integrate_mnn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3ba9371733a2"/>
-    <repository owner="ebi-gxa" name="scanpy_plot_scrublet" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2d3b13bb704a"/>
-    <repository owner="ebi-gxa" name="scanpy_multiplet_scrublet" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b8126b3bf5d0"/>
-    <repository owner="ebi-gxa" name="scanpy_compute_graph" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6417cccad133"/>
-    <repository owner="ebi-gxa" name="scanpy_normalise_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6b97ffba31da"/>
-    <repository owner="ebi-gxa" name="scanpy_parameter_iterator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a8c73996ac50"/>
-    <repository owner="ebi-gxa" name="scanpy_plot_embed" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="35f6611fb8c3"/>
-    <repository owner="ebi-gxa" name="scanpy_plot_trajectory" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f489ccdd423c"/>
-    <repository owner="ebi-gxa" name="scanpy_read_10x" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9afcfcd1d215"/>
-    <repository owner="ebi-gxa" name="scanpy_regress_variable" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1200b55768ce"/>
-    <repository owner="ebi-gxa" name="scanpy_run_diffmap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e2ca1846080f"/>
-    <repository owner="ebi-gxa" name="scanpy_run_dpt" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2e06dabb3f2f"/>
-    <repository owner="ebi-gxa" name="scanpy_run_fdg" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7c6581b57ad4"/>
-    <repository owner="ebi-gxa" name="scanpy_run_paga" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4e7d55438238"/>
-    <repository owner="ebi-gxa" name="scanpy_run_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="59028945c857"/>
-    <repository owner="ebi-gxa" name="scanpy_run_tsne" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="181d61d2f3cd"/>
-    <repository owner="ebi-gxa" name="scanpy_run_umap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bd4a244faeb8"/>
-    <repository owner="ebi-gxa" name="scanpy_scale_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f86b2c3bc459"/>
-    <repository owner="ebi-gxa" name="anndata_ops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a0274bc43b7e"/>
-    <repository owner="ebi-gxa" name="scanpy_find_markers" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="64259337506f"/>
+    <repository owner="ebi-gxa" name="scanpy_parameter_iterator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="99301e5feddc"/>
+    <repository owner="ebi-gxa" name="anndata_ops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2e8022f1923c"/>
+    <repository owner="ebi-gxa" name="scanpy_filter_cells" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="356fa6c27341"/>
+    <repository owner="ebi-gxa" name="scanpy_filter_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9a36525a8425"/>
+    <repository owner="ebi-gxa" name="scanpy_find_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d19920419c78"/>
+    <repository owner="ebi-gxa" name="scanpy_find_markers" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f0f78d29130f"/>
+    <repository owner="ebi-gxa" name="scanpy_find_variable_genes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="273faaa2bd69"/>
+    <repository owner="ebi-gxa" name="scanpy_integrate_bbknn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="12fc7e093094"/>
+    <repository owner="ebi-gxa" name="scanpy_integrate_combat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c6611adc8f4a"/>
+    <repository owner="ebi-gxa" name="scanpy_integrate_harmony" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="18e01a7c55c6"/>
+    <repository owner="ebi-gxa" name="scanpy_integrate_mnn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e9788746e0f6"/>
+    <repository owner="ebi-gxa" name="scanpy_plot_scrublet" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4276a6dea8d1"/>
+    <repository owner="ebi-gxa" name="scanpy_multiplet_scrublet" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fadc4fbf8025"/>
+    <repository owner="ebi-gxa" name="scanpy_compute_graph" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f776e3ed3c03"/>
+    <repository owner="ebi-gxa" name="scanpy_normalise_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4bbb2179521c"/>
+    <repository owner="ebi-gxa" name="scanpy_plot_embed" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bfb4d298d75f"/>
+    <repository owner="ebi-gxa" name="scanpy_read_10x" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="af6ecb5adcc1"/>
+    <repository owner="ebi-gxa" name="scanpy_regress_variable" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bd65279c7ddc"/>
+    <repository owner="ebi-gxa" name="scanpy_run_dpt" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2f569aa8c920"/>
+    <repository owner="ebi-gxa" name="scanpy_run_paga" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6b7a5d15a89b"/>
+    <repository owner="ebi-gxa" name="scanpy_run_tsne" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="64cd33540fee"/>
+    <repository owner="ebi-gxa" name="scanpy_scale_data" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bf30bd6355da"/>
+    <repository owner="ebi-gxa" name="scanpy_plot_trajectory" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9d746af31fe8"/>
+    <repository owner="ebi-gxa" name="scanpy_run_diffmap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="afec1d52b87d"/>
+    <repository owner="ebi-gxa" name="scanpy_run_fdg" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cef0ddd01875"/>
+    <repository owner="ebi-gxa" name="scanpy_run_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f0eecf608220"/>
+    <repository owner="ebi-gxa" name="scanpy_run_umap" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9984f48961d0"/>
 </repositories>
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