comparison cell-browser.xml @ 6:97483e5ec21e draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/ucsc-cell-browser/.shed.yml commit 30c232088d42557d13359dfa26f9c7ce5edfc444

5:544d44faa8bf

<tool id="ucsc_cell_browser" name="UCSC Cell Browser" version="1.0.0+galaxy0" profile="18.01">
  <description>displays single-cell clusterized data in an interactive web application.</description>
  <requirements>
    <requirement type="package" version="1.0.0">ucsc-cell-browser</requirement>
  </requirements>
<stdio>
<exit_code range="1:" />
</stdio>
<command><![CDATA[
#if $input_type.expression_source == "native-cell-browser":

   echo "coords = [ {'file':'$tsneCoordinates', 'shortLabel':'t-SNE'} ]" > ./cellbrowser.conf;

6:97483e5ec21e

<tool id="ucsc_cell_browser" name="UCSC Cell Browser" version="1.0.0+galaxy1" profile="18.01">
  <description>displays single-cell clusterized data in an interactive web application.</description>
  <requirements>
    <requirement type="package" version="1.0.0">ucsc-cell-browser</requirement>
  </requirements>
<stdio>
<exit_code range="1:" />
<regex source="both" match="Killed" level="fatal_oom" description="Killed, most likely due to OOM" />
</stdio>
<command><![CDATA[
#if $input_type.expression_source == "native-cell-browser":

   echo "coords = [ {'file':'$tsneCoordinates', 'shortLabel':'t-SNE'} ]" > ./cellbrowser.conf;