Mercurial > repos > ebi-gxa > ucsc_cell_browser
changeset 6:97483e5ec21e draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/ucsc-cell-browser/.shed.yml commit 30c232088d42557d13359dfa26f9c7ce5edfc444
| author | ebi-gxa |
|---|---|
| date | Sat, 15 Jul 2023 09:25:00 +0000 |
| parents | 544d44faa8bf |
| children | |
| files | cell-browser.xml get_test_data.sh |
| diffstat | 2 files changed, 3 insertions(+), 1 deletions(-) [+] |
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--- a/cell-browser.xml Sat Apr 17 23:42:28 2021 +0000 +++ b/cell-browser.xml Sat Jul 15 09:25:00 2023 +0000 @@ -1,10 +1,11 @@ -<tool id="ucsc_cell_browser" name="UCSC Cell Browser" version="1.0.0+galaxy0" profile="18.01"> +<tool id="ucsc_cell_browser" name="UCSC Cell Browser" version="1.0.0+galaxy1" profile="18.01"> <description>displays single-cell clusterized data in an interactive web application.</description> <requirements> <requirement type="package" version="1.0.0">ucsc-cell-browser</requirement> </requirements> <stdio> <exit_code range="1:" /> +<regex source="both" match="Killed" level="fatal_oom" description="Killed, most likely due to OOM" /> </stdio> <command><![CDATA[ #if $input_type.expression_source == "native-cell-browser":
--- a/get_test_data.sh Sat Apr 17 23:42:28 2021 +0000 +++ b/get_test_data.sh Sat Jul 15 09:25:00 2023 +0000 @@ -1,3 +1,4 @@ #!/usr/bin/env bash wget --retry-connrefused --waitretry=1 --read-timeout=20 --timeout=15 -t 3 http://ftp.ebi.ac.uk/pub/databases/microarray/data/atlas/sc_experiments/E-MTAB-6077/E-MTAB-6077.project.h5ad +mkdir -p test-data mv E-MTAB-6077.project.h5ad test-data/