Mercurial > repos > ecology > ecoregion_geonearestneighbor
annotate GeoNearestNeighbor.xml @ 2:ace69a8ec1c3 draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit c41939f1cdc03331ec021d47495576a6b0c5fd14
author | ecology |
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date | Wed, 16 Oct 2024 11:45:44 +0000 |
parents | 36637718c51d |
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rev | line source |
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5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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1 <tool id="ecoregion_GeoNearestNeighbor" name="GeoNearestNeighbor" version="0.1.0+galaxy0" profile="21.05"> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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2 <description>Merge two data tables by finding the closest points based on latitude and longitude coordinates (WGS84 projection).</description> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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3 <requirements> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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4 <requirement type="package" version="4.3.2">r-base</requirement> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
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5 <requirement type="package" version="1.3.1">r-tidyr</requirement> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
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6 <requirement type="package" version="1.0_15">r-sf</requirement> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
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7 <requirement type="package" version="1.1.4">r-dplyr</requirement> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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8 </requirements> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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9 <command detect_errors="exit_code"><![CDATA[ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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10 Rscript |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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11 '$__tool_directory__/GeoNN.R' |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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12 '$env_file.env' |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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13 '$env_file.envgeolong' |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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14 '$env_file.envgeolat' |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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15 '$occ_file.occ' |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
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16 '$occ_file.occgeolat' |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
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17 '$occ_file.occgeolong' |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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18 ]]></command> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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19 <inputs> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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20 <section name="env_file" title="Your environment file (or table 1)" > |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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21 <param name="env" type="data" format="tabular" label="Input your environment data file (tabular format only)" help="See example below"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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22 <param name="envgeolat" type="data_column" label="Choose columns where your latitude is in your environment data file." data_ref="env" multiple="false" use_header_names="true"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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23 <param name="envgeolong" type="data_column" label="Choose columns where your longitude is in your environment data file." data_ref="env" multiple="false" use_header_names="true"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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24 </section> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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25 <section name="occ_file" title="Your occurrence file (or table 2)" > |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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26 <param name="occ" type="data" format="tabular" label="Input your occurrence data file (tabular format only)" help="See example below"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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27 <param name="occgeolat" type="data_column" label="Choose columns where your latitude is in your occurrence data file." data_ref="occ" multiple="false" use_header_names="true"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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28 <param name="occgeolong" type="data_column" label="Choose columns where your longitude is in your occurrence data file." data_ref="occ" multiple="false" use_header_names="true"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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29 </section> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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30 </inputs> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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31 <outputs> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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32 <data name="occ_env_out" from_work_dir="occurrence_env.tsv" format="tabular" label="Merged table"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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33 <data name="info_out" from_work_dir="infos_file.tsv" format="tabular" label="Information file"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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34 </outputs> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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35 <tests> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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36 <test> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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37 <param name="env" value="ceamarc_env.tsv"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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38 <param name="envgeolat" value="2"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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39 <param name="envgeolong" value="1"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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40 <param name="occ" value="fish_wide.tsv"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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41 <param name="occgeolat" value="1"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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42 <param name="occgeolong" value="2"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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43 <output name='occ_env_out'> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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44 <assert_contents> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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45 <has_size value="2234" delta="50"/> |
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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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46 </assert_contents> |
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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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47 </output> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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48 <output name='info_out'> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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49 <assert_contents> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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50 <has_n_columns n="3"/> |
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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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51 <has_text text="occ_geometry"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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52 <has_text text="env_geometry"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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53 <has_text text="Distances (meters)"/> |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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54 </assert_contents> |
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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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55 </output> |
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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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56 </test> |
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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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57 </tests> |
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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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58 <help><![CDATA[ |
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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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59 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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60 ================== |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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61 **What it does ?** |
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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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62 ================== |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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63 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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64 This Galaxy tool allows you to merge two data tables (tabular format only) according to their latitude and longitude coordinates (in **WGS84** projection), finding the closest points. |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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65 This tool can be used as part of the Ecoregionalization workflow data preparation that allows you to create ecoregions from occurrence and environmental data. |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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66 |
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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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67 =================== |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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68 **How to use it ?** |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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69 =================== |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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70 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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71 This tool takes in input the environmental data as well as the species occurrence data. See examples of inputs below. These files must be in tabular format. You also need to select the column(s) where your latitude and longitude parameters are located in both files. |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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72 To be as precise as possible, the latitude and longitude in both files must be of the same precision. |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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73 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
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74 This tool gives in output two files: |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
75 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
76 - Information file conataining the coordinates of occurrence data, the coordinates retains from environemental data and the distances between the two. See example below. |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
77 - Occurrence and Environement merge file containing occurrence data and environmental data cooresponding. See example below. |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
78 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
79 ############################################################# |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
80 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
81 **Example of occurence data input:** |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
82 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
83 +----------+-----------+------------------------+-----------+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
84 | lat | long |Acanthorhabdus_fragilis | Acarnidae | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
85 +----------+-----------+------------------------+-----------+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
86 |-67.22 |139,96 | 0 | 1 | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
87 +----------+-----------+------------------------+-----------+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
88 |-66,52 | 140 | 0 | 1 | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
89 +----------+-----------+------------------------+-----------+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
90 | ... | ... | ... | ... | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
91 +----------+-----------+------------------------+-----------+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
92 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
93 ############################################################# |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
94 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
95 **Example of environmental data input:** |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
96 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
97 +------+------+---------+------+--------------+-----+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
98 | long | lat | Carbo | Grav | Maxbearing | ... | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
99 +------+------+---------+------+--------------+-----+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
100 |140.13|-66.7 | 0.88 |28.59 | 3.67 | ... | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
101 +------+------+---------+------+--------------+-----+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
102 |140 |-66.52| 0.88 |28.61 | 3.64 | ... | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
103 +------+------+---------+------+--------------+-----+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
104 | ... | ... | ... | ... | ... | ... | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
105 +------+------+---------+------+--------------+-----+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
106 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
107 ##################################################### |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
108 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
109 **Example of information file output:** |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
110 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
111 +-------------------+------------------+--------------------+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
112 | occ_geometry | env_geometry | Distances (meters) | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
113 +-------------------+------------------+--------------------+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
114 | c(139.96, -67.22) | c(140.13, -66.7) | 58292.77 | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
115 +-------------------+------------------+--------------------+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
116 | c(140, -66.52) | c(140, -66.52) | 0 | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
117 +-------------------+------------------+--------------------+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
118 | ... | ... | ... | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
119 +-------------------+------------------+--------------------+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
120 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
121 ############################################################# |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
122 |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
123 **Example of Occurrence and environment merge file output:** |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
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|
124 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
125 +----------+-----------+------------------------+-----------+---------+------+--------------+-----+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
126 | lat | long |Acanthorhabdus_fragilis | Acarnidae | Carbo | Grav | Maxbearing | ... | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
127 +----------+-----------+------------------------+-----------+---------+------+--------------+-----+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
128 |-67,22 | 139.96 | 0 | 1 | 0.88 |28.59 | 3.67 | ... | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
129 +----------+-----------+------------------------+-----------+---------+------+--------------+-----+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
130 |-66,52 | 140 | 0 | 1 | 0.88 |28.61 | 3.64 | ... | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
131 +----------+-----------+------------------------+-----------+---------+------+--------------+-----+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
132 | ... | ... | ... | ... | ... | ... | ... | ... | |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
133 +----------+-----------+------------------------+-----------+---------+------+--------------+-----+ |
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
diff
changeset
|
134 ]]></help> |
1
36637718c51d
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit e03df85746a3b61a382a5ee7e3357a8bf42a5097
ecology
parents:
0
diff
changeset
|
135 <citations> |
36637718c51d
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit e03df85746a3b61a382a5ee7e3357a8bf42a5097
ecology
parents:
0
diff
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|
136 <citation type="doi">10.32614/RJ-2018-009</citation> |
36637718c51d
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit e03df85746a3b61a382a5ee7e3357a8bf42a5097
ecology
parents:
0
diff
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|
137 <citation type="doi">10.32614/CRAN.package.dplyr</citation> |
36637718c51d
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit e03df85746a3b61a382a5ee7e3357a8bf42a5097
ecology
parents:
0
diff
changeset
|
138 <citation type="doi">10.32614/CRAN.package.sf</citation> |
36637718c51d
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit e03df85746a3b61a382a5ee7e3357a8bf42a5097
ecology
parents:
0
diff
changeset
|
139 </citations> |
0
5cde56683579
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/Ecoregionalization_workflow commit 5d48df67919fbc9d77b98a8243d438c397f61a0e
ecology
parents:
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|
140 </tool> |