annotate ogrinfo.xml @ 0:edd99ac6d4a4 draft

planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
author ecology
date Tue, 26 Feb 2019 11:50:33 -0500
parents
children 7bdf6ee695a8
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
1 <tool id="gdal_ogrinfo" name="OGR Informations" version="@VERSION@">
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
2 <description>lists information about an OGR supported data source</description>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
3 <macros>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
4 <import>gdal_macros.xml</import>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
5 </macros>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
6 <expand macro="gdal_requirements" />
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
7 <command detect_errors="exit_code"><![CDATA[
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
8 ogrinfo -ro '$input1' -al
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
9 #if $settings.advanced=='advanced'
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
10 #if $settings.condi_sql.sql=='sql':
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
11 #if str($settings.condi_sql.sql_statement).strip()!='':
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
12 -sql '$settings.condi_sql.sql_statement'
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
13 #end if
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
14 #end if
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
15 $settings.so
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
16 #end if
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
17 > '$output'
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
18 ]]></command>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
19 <inputs>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
20 <param type="data" name="input1" format="xml,txt,netcdf" label="Gdal supported vector input file" help="Currently supported format are GeoJSON GML KML and WFS"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
21 <conditional name="settings">
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
22 <expand macro="gdal_advanced_params_select"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
23 <when value="advanced">
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
24 <conditional name="condi_sql">
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
25 <param name="sql" type="select" label="Use a sql query on the file" help="-sql. Execute the indicated SQL statement and return the result">
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
26 <option value="no_sql" selected="true">Don't use the -sql option</option>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
27 <option value="sql">Use the -sql option</option>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
28 </param>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
29 <when value="no_sql">
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
30 </when>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
31 <when value="sql">
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
32 <param name="sql_statement" type="text" label="Execute the indicated SQL" help="-sql statement eg : SELECT * FROM layer WHERE X>10." value="">
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
33 <sanitizer sanitize="False"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
34 <validator type="regex" message="Type a valid SQL query">^(?ims)\s*select\s+.*\s+from\s+.*$</validator>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
35 </param>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
36 </when>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
37 </conditional>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
38 <param name="so" label="Summary Only" help="-so. Suppress listing of features, show only the summary information like projection, schema, feature count and extents" type="boolean" truevalue="-so" falsevalue="" checked="true"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
39 </when>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
40 </conditional>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
41 </inputs>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
42 <outputs>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
43 <data name="output" format="txt" label="OGR Info file on ${on_string}"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
44 </outputs>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
45 <tests>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
46 <test>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
47 <param name="input1" value="custom.geo.json"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
48 <param name="advanced" value="simple"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
49 <output name="output" file="ogrinfo_test1_out2.txt" lines_diff="4"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
50 </test>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
51 <test>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
52 <param name="input1" value="custom.geo.json"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
53 <param name="advanced" value="advanced"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
54 <param name="sql" value="sql"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
55 <param name="sql_statement" value="SELECT * FROM OGRGeoJSON"/> <!-- WARNING the FROM here is fixed to pass travis test, the dataset number changes depending of the input -->
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
56 <param name="so" value="-so"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
57 <output name="output" file="ogrinfo_test2_out2.txt" lines_diff="4"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
58 </test>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
59 </tests>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
60 <help><![CDATA[
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
61 ========
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
62 Ogrinfo
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
63 ========
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
64
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
65 **What it does**
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
66
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
67 The Ogrinfo program lists various information about an OGR supported vector dataset.
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
68
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
69 |
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
70
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
71 **How to use it**
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
72
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
73 Select from history a suported vector file.
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
74
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
75 |
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
76
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
77 **Advanced options and sources**
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
78
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
79 To see complete details and help section please check the official gdal sources.
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
80
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
81 http://www.gdal.org
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
82
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
83 http://www.gdal.org/ogr_utilities.html
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
84
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
85 http://download.osgeo.org/gdal/workshop/foss4ge2015/workshop_gdal.pdf
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
86 ]]></help>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
87 <expand macro="gdal_citation"/>
edd99ac6d4a4 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
88 </tool>