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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 8b4b58222af2c77abd41dd8f17862a24ca7d3381
author ecology
date Fri, 06 Sep 2024 10:30:30 +0000
parents afede0916f0a
children
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<tool id="hirondelle_crim" name="Hirondelle CRIM OGC API Processes" version="0.2.0" profile="22.05">
	<description>executes remote processes.</description>
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="requirements"/>
	<command detect_errors="exit_code"><![CDATA[
	Rscript '$__tool_directory__/ogc_api_processes_wrapper.R'
		--outputData '$output_data'
]]></command>
	<configfiles>
		<inputs name="inputs" filename="inputs.json" data_style="paths"/>
	</configfiles>
	<inputs>
		<conditional name="conditional_process">
			<param name="select_process" type="select" label="Select process">
				<option value="calculate-band">calculate-band: Performs a calculation with bands.</option>
				<option value="download-band-sentinel2-product-safe">download-band-sentinel2-product-safe: Downloads Copernicus products.</option>
				<option value="plot-image">plot-image: Plots an image with colors.</option>
				<option value="reproject-image">reproject-image: Performs image reprojection.</option>
				<option value="select-products-sentinel2">select-products-sentinel2: Searches the specified catalog for Sentinel-2 products matching filtering criteria.</option>
			</param>
			<when value="calculate-band">
				<param name="cookie" label="cookie" optional="false" value="" type="text"/>
				<param name="calc" label="Calculation" optional="false" help="Calculation to perform with band references." type="text"/>
				<param name="band_a" label="Band A" optional="true" type="data" format="txt"/>
				<param name="band_b" label="Band B" optional="true" type="data" format="txt"/>
				<param name="band_c" label="Band C" optional="true" type="data" format="txt"/>
				<param name="band_d" label="Band D" optional="true" type="data" format="txt"/>
				<param name="band_e" label="Band E" optional="true" type="data" format="txt"/>
				<param name="band_f" label="Band F" optional="true" type="data" format="txt"/>
				<param name="band_g" label="Band G" optional="true" type="data" format="txt"/>
				<param name="band_h" label="Band H" optional="true" type="data" format="txt"/>
				<param name="band_i" label="Band I" optional="true" type="data" format="txt"/>
				<param name="band_j" label="Band J" optional="true" type="data" format="txt"/>
				<param name="band_k" label="Band K" optional="true" type="data" format="txt"/>
				<param name="band_l" label="Band L" optional="true" type="data" format="txt"/>
				<param name="band_m" label="Band M" optional="true" type="data" format="txt"/>
				<param name="band_n" label="Band N" optional="true" type="data" format="txt"/>
				<param name="band_o" label="Band O" optional="true" type="data" format="txt"/>
				<param name="band_p" label="Band P" optional="true" type="data" format="txt"/>
				<param name="band_q" label="Band Q" optional="true" type="data" format="txt"/>
				<param name="band_r" label="Band R" optional="true" type="data" format="txt"/>
				<param name="band_s" label="Band S" optional="true" type="data" format="txt"/>
				<param name="band_t" label="Band T" optional="true" type="data" format="txt"/>
				<param name="band_u" label="Band U" optional="true" type="data" format="txt"/>
				<param name="band_v" label="Band V" optional="true" type="data" format="txt"/>
				<param name="band_w" label="Band W" optional="true" type="data" format="txt"/>
				<param name="band_x" label="Band X" optional="true" type="data" format="txt"/>
				<param name="band_y" label="Band Y" optional="true" type="data" format="txt"/>
				<param name="band_z" label="Band Z" optional="true" type="data" format="txt"/>
			</when>
			<when value="download-band-sentinel2-product-safe">
				<param name="product_url" label="Product URL" help="S3 URL to a Sentinel-2 product in SAFE format." optional="false" type="data" format="txt"/>
				<param name="user_credentials" label="User credentials" optional="false" type="data" format="json"/>
				<param name="cookie" label="cookie" optional="false" value="" type="text"/>
				<param name="resolution" label="resolution" optional="true" type="select">
					<option value="10m">10m</option>
					<option value="20m">20m</option>
					<option value="60m">60m</option>
				</param>
				<param name="band" label="band" optional="false" type="select">
					<option value="B01">B01</option>
					<option value="B02">B02</option>
					<option value="B03">B03</option>
					<option value="B04">B04</option>
					<option value="B05">B05</option>
					<option value="B06">B06</option>
					<option value="B07">B07</option>
					<option value="B08">B08</option>
					<option value="B8A">B8A</option>
					<option value="B09">B09</option>
					<option value="B11">B11</option>
					<option value="B12">B12</option>
					<option value="AOT">AOT</option>
					<option value="SCL">SCL</option>
					<option value="TCI">TCI</option>
					<option value="WVP">WVP</option>
				</param>
				<param name="debug" label="Debug" optional="true" type="boolean"/>
			</when>
			<when value="plot-image">
				<param name="cookie" label="cookie" optional="false" value="" type="text"/>
				<param name="input_image" label="Input image" optional="false" help="Image to map with the colors bins." type="data" format="txt"/>
				<param name="color_scale" label="Color mappings to bin scales to apply to the image." optional="false" help="JSON-like array with each item being an array of 2 elements, the first for the bin scale value and the second for the RGB color. Each RGB value can be either a [0-1] floating point or a [0-255] integer. Example: '[ [0, [0,0,0]], [20, [0,0,255]], [50, [255,100,0]] ]'" type="text"/>
				<param name="output_name" label="Output name" optional="true" type="text"/>
				<param name="plot_name" label="Plot name" optional="true" type="text"/>
				<param name="plot_title" label="Plot title" optional="true" type="text"/>
			</when>
			<when value="reproject-image">
				<param name="cookie" label="cookie" optional="false" value="" type="text"/>
				<param name="input_image" label="input_image" optional="false" type="data" format="txt"/>
				<param name="output_dimensions_Array_integer" label="output_dimensions" optional="true" help="Please provide comma-seperated values of type integer here." type="text"/>
				<param name="output_resolution_Array_integer" label="Output resolution" optional="true" help="Please provide comma-seperated values of type integer here." type="text"/>
			</when>
			<when value="select-products-sentinel2">
				<param name="cookie" label="cookie" optional="false" value="" type="text"/>
				<param name="date" label="Central date" optional="true" help="Date around which ±delta-days will be applied for search. If omitted, 'toi' input must be provided instead." type="text"/>
				<param name="delta" label="Delta" optional="true" type="integer"/>
				<param name="toi_Array_text" label="Time of interest" optional="true" help="Start and end date-time strings. Must be provided if 'date' input is omitted. Please provide comma-seperated values of type text here." type="text"/>
				<param name="aoi" label="Area of interest" optional="false" help="Polygon defining the area of interest." type="data" format="txt"/>
				<param name="collection" label="Collection" optional="false" type="text"/>
				<param name="product_level" label="Product level" optional="true" help="Please provide comma-seperated values of type text here." type="select">
					<option value="L1C">L1C</option>
					<option value="L2A">L2A</option>
				</param>
				<param name="catalog" label="catalog" optional="false" type="select">
					<option value="copernicus">copernicus</option>
					<option value="earth-search">earth-search</option>
				</param>
				<param name="cloud_cover" label="Cloud cover" optional="true" type="float"/>
			</when>
		</conditional>
	</inputs>
	<outputs>
		<data name="output_data" format="txt" label="$select_process"/>
	</outputs>
	<expand macro="tests"/>
	<help>Use the dropdown menu at the top to select the process and then complete the corresponding from, which is different for every process.</help>
	<expand macro="citations"/>
</tool>