view macro.xml @ 1:b40aba3d9e5c draft default tip

planemo upload for repository https://github.com/Marie59/Sentinel_2A/srs_tools commit 0f331043178bbfbe5cda0e31d887971464b3071c

<macros>
    <token name="@VERSION@">0.0.1</token>
    <xml name="SRS_requirements">
        <requirements>
            <requirement type="package" version="4.2.2">r-base</requirement>
            <requirement type="package" version="2.12.2">r-r.utils</requirement>
            <requirement type="package" version="1.0_7">r-sf</requirement>
            <requirement type="package" version="1.5_32">r-rgdal</requirement>
            <requirement type="package" version="0.6_1">r-rgeos</requirement>
            <requirement type="package" version="0.5_5">r-stars</requirement>
            <requirement type="package" version="1.5.0">r-stringr</requirement>
            <requirement type="package" version="1.9.8">r-biodivmapr</requirement>
            <requirement type="package" version="0.36">r-xfun</requirement>
            <requirement type="package" version="0.51.4">r-rastervis</requirement>
            <requirement type="package" version="3.4.0">r-ggplot2</requirement>
            <requirement type="package" version="2.11.0">r-mapview</requirement>
            <requirement type="package" version="2.3">r-gridextra</requirement>
            <requirement type="package" version="3.0.0">r-emstreer</requirement>
            <requirement type="package" version="3.2.3">r-filesstrings</requirement>
            <!--requirement type="package" version="9.0.1">proj</requirement-->
            <yield/>
        </requirements>
    </xml>
    <xml name="SRS_input">
       <param name="input" type="data" format="tabular,csv,txt" label="Input table"/>
       <param name="colnames" type="boolean" label="First line is a header line" checked="true"/>
    </xml>
    <xml name="SRS_bibref">
       <citations>
            <citation type="bibtex">
            @Manual{,
            title = {obisindicators: Develop marine biodiversity indicators from OBIS data},
            author = {Ben Ben and Pieter Provoost and Tylar Murray},
            year = {2022},
            note = {https://marinebon.org/obisindicators,
            https://github.com/marinebon/obisindicators},
            }
            </citation>
        </citations>
    </xml>
    <xml name="SRS_S2ref">
        <citations>
            <citation type="bibtex">
            @Manual{,
            title = {preprocS2: preprocessing of Sentinel-2 data downloaded from various data hubs / produced from various atmospheric correction methods},
            author = {Jean-Baptiste Feret},
            year = {2022},
            note = {R package version 1.1.3},
            url = {https://gitlab.com/jbferet/preprocS2},
            }
            </citation>   
        </citations>
    </xml>
    <xml name="SRS_BDMRref">
        <citations>
            <citation type="bibtex">
            @Manual{,
            title = {biodivMapR: biodivMapR: an R package for a- and ß-diversity mapping using remotely-sensed images},
            author = {Jean-Baptiste Feret and Florian {de Boissieu}},
            year = {2022},
            note = {R package version 1.9.4},
            url = {https://github.com/jbferet/biodivMapR},
            }
            </citation>   
        </citations>
    </xml>
    <xml name="SRS_rasterdivref">
        <citations>
            <citation type="doi">doi:10.1016/j.ecolind.2016.07.039</citation> 
            <citation type="doi">doi:10.1101/2021.01.23.427872</citation>     
        </citations>
    </xml>
    <xml name="SRS_prosailref">
        <citations>
            <citation type="bibtex">
            @Manual{,
            title = {prosail: PROSAIL leaf and canopy radiative transfer model and inversion routines},
            author = {Jean-Baptiste Feret and Florian {de Boissieu}},
            year = {2022},
            note = {R package version 1.1.1},
            url = {https://gitlab.com/jbferet/prosail},
            }
            </citation>   
        </citations>
    </xml>
    <xml name="SRS_metaref">
        <citations>
            <citation type="doi">doi.org/10.5281/zenodo.5907920</citation>
        </citations>
    </xml>
    <xml name="SRS_vegetpheno">
        <citations>
            <citation type="doi">doi.org/10.1016/j.rse.2013.09.022</citation>
        </citations>
    </xml>
    <xml name="topic">
        <edam_topics>
           <edam_topic>topic_0610</edam_topic>
           <edam_topic>topic_3050</edam_topic>
        </edam_topics>
    </xml>
</macros>