Mercurial > repos > ecology > vigiechiro_idvalid
comparison IdValiden.xml @ 0:8c472c4f1bf5 draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/vigiechiro commit d2de8e10c11bfa3b04729e59bba58e08d23b56aa
author | ecology |
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date | Wed, 13 Mar 2019 11:18:58 -0400 |
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1 <tool id="vigiechiro_idvalid" name="Tadarida identifications integration" version="@VERSION@"> | |
2 <description>Integrate identifications from animal detection on acoustic recordings</description> | |
3 <macros> | |
4 <import>vigiechiro_macros.xml</import> | |
5 </macros> | |
6 <requirements> | |
7 <requirement type="package" version="1.10.4">r-data.table</requirement> | |
8 </requirements> | |
9 <command detect_errors="exit_code"><![CDATA[ | |
10 Rscript '$__tool_directory__/IdValid.R' | |
11 '$inputfile' | |
12 '$__tool_directory__/Referentiel_seuils_C2.csv' | |
13 '$output' | |
14 ]]> | |
15 </command> | |
16 <inputs> | |
17 <param name="inputfile" type="data" format="tabular" label="Corrected observation file" help="Use output file from Tadarida data clean : a sampling session file corrected."/> | |
18 </inputs> | |
19 <outputs> | |
20 <data name="output" format="tabular" from_work_dir="output.tabular" label="${tool.name} on ${on_string}"/> | |
21 </outputs> | |
22 <tests> | |
23 <test> | |
24 <param name="inputfile" value="IdCor2Layer_Test1_out.tabular"/> | |
25 <output name="output" file="BilanEnrichiPF_Test1.tabular"/> | |
26 </test> | |
27 </tests> | |
28 <help><![CDATA[ | |
29 .. class:: infomark | |
30 | |
31 ===================================== | |
32 Tadarida identifications integration | |
33 ===================================== | |
34 | |
35 **What it does** | |
36 | |
37 This tool allows to integrate identifications made by observers and validators and will provide an input for synthesis of participations. | |
38 | |
39 | |
40 **Arguments** | |
41 | |
42 - The input is a tabular file, output from the tool Tadarida data cleaner. | |
43 - The output is a single tabular file with validated Ids | |
44 ]]></help> | |
45 <expand macro="vigiechiro_bibref" /> | |
46 </tool> |