Mercurial > repos > ecology > vigiechiro_idvalid
view IdValiden.xml @ 0:8c472c4f1bf5 draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/vigiechiro commit d2de8e10c11bfa3b04729e59bba58e08d23b56aa
author | ecology |
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date | Wed, 13 Mar 2019 11:18:58 -0400 |
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<tool id="vigiechiro_idvalid" name="Tadarida identifications integration" version="@VERSION@"> <description>Integrate identifications from animal detection on acoustic recordings</description> <macros> <import>vigiechiro_macros.xml</import> </macros> <requirements> <requirement type="package" version="1.10.4">r-data.table</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ Rscript '$__tool_directory__/IdValid.R' '$inputfile' '$__tool_directory__/Referentiel_seuils_C2.csv' '$output' ]]> </command> <inputs> <param name="inputfile" type="data" format="tabular" label="Corrected observation file" help="Use output file from Tadarida data clean : a sampling session file corrected."/> </inputs> <outputs> <data name="output" format="tabular" from_work_dir="output.tabular" label="${tool.name} on ${on_string}"/> </outputs> <tests> <test> <param name="inputfile" value="IdCor2Layer_Test1_out.tabular"/> <output name="output" file="BilanEnrichiPF_Test1.tabular"/> </test> </tests> <help><![CDATA[ .. class:: infomark ===================================== Tadarida identifications integration ===================================== **What it does** This tool allows to integrate identifications made by observers and validators and will provide an input for synthesis of participations. **Arguments** - The input is a tabular file, output from the tool Tadarida data cleaner. - The output is a single tabular file with validated Ids ]]></help> <expand macro="vigiechiro_bibref" /> </tool>