annotate zoo_project_ogc_api_processes.xml @ 2:bcb6009d5af7 draft default tip

planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
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date Wed, 08 May 2024 21:05:47 +0000
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1 <tool id="zoo_project_ogc_api_processes" name="Zoo Project OGC API Processes" version="0.1.0" profile="22.05">
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2 <description>executes remote OTB processes</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements"/>
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7 <command detect_errors="exit_code"><![CDATA[
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8 Rscript '$__tool_directory__/ogc_api_processes_wrapper.R'
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9 --outputData '$output_data'
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10 ]]></command>
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11 <configfiles>
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12 <inputs name="inputs" filename="inputs.json" data_style="paths"/>
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13 </configfiles>
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14 <inputs>
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15 <conditional name="conditional_process">
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16 <param name="select_process" type="select" label="Select process">
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17 <option value="OTB.MorphologicalMultiScaleDecomposition">OTB.MorphologicalMultiScaleDecomposition: Perform a geodesic morphology based image analysis on an input image channel</option>
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18 <option value="OTB.Convert">OTB.Convert: Convert an image to a different format, optionally rescaling the data and/or changing the pixel type.</option>
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19 <option value="OTB.PredictRegression">OTB.PredictRegression: Performs a prediction of the input image according to a regression model file.</option>
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20 <option value="OTB.SARPolarMatrixConvert">OTB.SARPolarMatrixConvert: This applications allows converting classical polarimetric matrices to each other.</option>
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21 <option value="OTB.ImageClassifier">OTB.ImageClassifier: Performs a classification of the input image according to a model file.</option>
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22 <option value="OTB.ManageNoData">OTB.ManageNoData: Manage No-Data</option>
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23 <option value="OTB.SFSTextureExtraction">OTB.SFSTextureExtraction: Computes Structural Feature Set textures on every pixel of the input image selected channel</option>
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24 <option value="OTB.VectorDataExtractROI">OTB.VectorDataExtractROI: Perform an extract ROI on the input vector data according to the input image extent</option>
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25 <option value="OTB.HyperspectralUnmixing">OTB.HyperspectralUnmixing: Estimate abundance maps from an hyperspectral image and a set of endmembers.</option>
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26 <option value="OTB.HooverCompareSegmentation">OTB.HooverCompareSegmentation: Compare two segmentations with Hoover metrics</option>
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27 <option value="OTB.ComputeConfusionMatrix">OTB.ComputeConfusionMatrix: Computes the confusion matrix of a classification</option>
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28 <option value="OTB.ConcatenateImages">OTB.ConcatenateImages: Concatenate a list of images of the same size into a single multi-channel one.</option>
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29 <option value="OTB.SampleAugmentation">OTB.SampleAugmentation: Generates synthetic samples from a sample data file.</option>
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30 <option value="OTB.HaralickTextureExtraction">OTB.HaralickTextureExtraction: Computes Haralick textural features on the selected channel of the input image</option>
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31 <option value="OTB.ConvertSensorToGeoPoint">OTB.ConvertSensorToGeoPoint: Sensor to geographic coordinates conversion.</option>
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32 <option value="OTB.DSFuzzyModelEstimation">OTB.DSFuzzyModelEstimation: Estimate feature fuzzy model parameters using 2 vector data (ground truth samples and wrong samples).</option>
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33 <option value="OTB.OrthoRectification">OTB.OrthoRectification: This application allows ortho-rectifying optical and radar images from supported sensors.</option>
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34 <option value="OTB.BinaryMorphologicalOperation">OTB.BinaryMorphologicalOperation: Performs morphological operations on an input image channel</option>
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35 <option value="OTB.BlockMatching">OTB.BlockMatching: Performs block-matching to estimate pixel-wise disparities between two images.</option>
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36 <option value="OTB.KmzExport">OTB.KmzExport: Export the input image in a KMZ product.</option>
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37 <option value="OTB.ConnectedComponentSegmentation">OTB.ConnectedComponentSegmentation: Connected component segmentation and object based image filtering of the input image according to user-defined criterions.</option>
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38 <option value="OTB.TrainImagesClassifier">OTB.TrainImagesClassifier: Train a classifier from multiple pairs of images and training vector data.</option>
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39 <option value="OTB.MultivariateAlterationDetector">OTB.MultivariateAlterationDetector: Change detection by Multivariate Alteration Detector (MAD) algorithm</option>
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40 <option value="OTB.ComputePolylineFeatureFromImage">OTB.ComputePolylineFeatureFromImage: This application computes the chosen descriptors for each studied polyline contained in the input VectorData.</option>
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41 <option value="OTB.MultiImageSamplingRate">OTB.MultiImageSamplingRate: Compute sampling rate for an input set of images.</option>
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42 <option value="OTB.Segmentation">OTB.Segmentation: Performs segmentation of an image, and output either a raster or a vector file. In vector mode, large input datasets are supported.</option>
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43 <option value="OTB.VectorDataDSValidation">OTB.VectorDataDSValidation: Vector data validation based on the fusion of features using Dempster-Shafer evidence theory framework.</option>
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44 <option value="OTB.OGRLayerClassifier">OTB.OGRLayerClassifier: Classify an OGR layer based on a machine learning model and a list of features to consider.</option>
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45 <option value="OTB.OSMDownloader">OTB.OSMDownloader: Download vector data from OSM and store it to file</option>
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46 <option value="OTB.DisparityMapToElevationMap">OTB.DisparityMapToElevationMap: Projects a disparity map into a regular elevation map.</option>
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47 <option value="OTB.VectorClassifier">OTB.VectorClassifier: Performs a classification of the input vector data according to a model file.</option>
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48 <option value="OTB.ObtainUTMZoneFromGeoPoint">OTB.ObtainUTMZoneFromGeoPoint: UTM zone determination from a geographic point.</option>
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49 <option value="OTB.SOMClassification">OTB.SOMClassification: SOM image classification.</option>
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50 <option value="OTB.GeneratePlyFile">OTB.GeneratePlyFile: Generate a 3D Ply file from a DEM and a color image.</option>
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51 <option value="OTB.StereoRectificationGridGenerator">OTB.StereoRectificationGridGenerator: Generates two deformation fields to resample in epipolar geometry, a pair of stereo images up to the sensor model precision</option>
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52 <option value="OTB.SARDeburst">OTB.SARDeburst: This application performs deburst of Sentinel1 IW SLC images by removing redundant lines.</option>
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53 <option value="OTB.SampleExtraction">OTB.SampleExtraction: Extracts samples values from an image.</option>
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54 <option value="OTB.MorphologicalProfilesAnalysis">OTB.MorphologicalProfilesAnalysis: Performs morphological profiles analysis on an input image channel.</option>
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55 <option value="OTB.MeanShiftSmoothing">OTB.MeanShiftSmoothing: This application smooths an image using the MeanShift algorithm.</option>
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56 <option value="OTB.BundleToPerfectSensor">OTB.BundleToPerfectSensor: Perform P+XS pansharpening</option>
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57 <option value="OTB.ConvertCartoToGeoPoint">OTB.ConvertCartoToGeoPoint: Convert cartographic coordinates to geographic ones.</option>
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58 <option value="OTB.VectorDataTransform">OTB.VectorDataTransform: Apply a transform to each vertex of the input VectorData</option>
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59 <option value="OTB.FusionOfClassifications">OTB.FusionOfClassifications: Fuses several classifications maps of the same image on the basis of class labels.</option>
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60 <option value="OTB.VectorDataSetField">OTB.VectorDataSetField: Set a field in vector data.</option>
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61 <option value="OTB.Pansharpening">OTB.Pansharpening: Perform P+XS pansharpening</option>
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62 <option value="OTB.ConcatenateVectorData">OTB.ConcatenateVectorData: Concatenate vector data files</option>
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63 <option value="OTB.GridBasedImageResampling">OTB.GridBasedImageResampling: Resamples an image according to a resampling grid</option>
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64 <option value="OTB.SARPolarSynth">OTB.SARPolarSynth: Gives, for each pixel, the power that would have been received by a SAR system with a basis different from the classical (H,V) one (polarimetric synthetis).</option>
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65 <option value="OTB.GrayScaleMorphologicalOperation">OTB.GrayScaleMorphologicalOperation: Performs morphological operations on a grayscale input image</option>
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66 <option value="OTB.ReadImageInfo">OTB.ReadImageInfo: Get information about the image</option>
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67 <option value="OTB.ImageEnvelope">OTB.ImageEnvelope: Extracts an image envelope.</option>
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68 <option value="OTB.LSMSVectorization">OTB.LSMSVectorization: This application performs the fourth step of the exact Large-Scale Mean-Shift segmentation workflow [1].</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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69 <option value="OTB.FineRegistration">OTB.FineRegistration: Estimate disparity map between two images.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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70 <option value="OTB.GenerateRPCSensorModel">OTB.GenerateRPCSensorModel: Generate a RPC sensor model from a list of Ground Control Points.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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71 <option value="OTB.DomainTransform">OTB.DomainTransform: Domain Transform application for wavelet and fourier</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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72 <option value="OTB.RefineSensorModel">OTB.RefineSensorModel: Perform least-square fit of a sensor model to a set of tie points</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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73 <option value="OTB.ComputeImagesStatistics">OTB.ComputeImagesStatistics: Computes global mean and standard deviation for each band from a set of images and optionally saves the results in an XML file.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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74 <option value="OTB.Rasterization">OTB.Rasterization: Rasterize a vector dataset.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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75 <option value="OTB.BandMath">OTB.BandMath: Outputs a monoband image which is the result of a mathematical operation on several multi-band images.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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76 <option value="OTB.RigidTransformResample">OTB.RigidTransformResample: Resample an image with a rigid transform</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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77 <option value="OTB.SARCalibration">OTB.SARCalibration: Perform radiometric calibration of SAR images. Following sensors are supported: TerraSAR-X, Sentinel1 and Radarsat-2.Both Single Look Complex(SLC) and detected products are supported as input.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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78 <option value="OTB.Smoothing">OTB.Smoothing: Apply a smoothing filter to an image</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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79 <option value="OTB.TileFusion">OTB.TileFusion: Fusion of an image made of several tile files.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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80 <option value="OTB.ColorMapping">OTB.ColorMapping: Maps an input label image to 8-bits RGB using look-up tables.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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81 <option value="OTB.Superimpose">OTB.Superimpose: Using available image metadata, project one image onto another one</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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82 <option value="OTB.ClassificationMapRegularization">OTB.ClassificationMapRegularization: Filters the input labeled image using Majority Voting in a ball shaped neighbordhood.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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83 <option value="OTB.DynamicConvert">OTB.DynamicConvert: Change the pixel type and rescale the image's dynamic</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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84 <option value="OTB.Rescale">OTB.Rescale: Rescale the image between two given values.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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85 <option value="OTB.Quicklook">OTB.Quicklook: Generates a subsampled version of an image extract</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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86 <option value="OTB.RadiometricIndices">OTB.RadiometricIndices: Compute radiometric indices.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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87 <option value="OTB.ExtractROI">OTB.ExtractROI: Extract a ROI defined by the user.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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88 <option value="OTB.PolygonClassStatistics">OTB.PolygonClassStatistics: Computes statistics on a training polygon set.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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89 <option value="OTB.DEMConvert">OTB.DEMConvert: Converts a geo-referenced DEM image into a general raster file compatible with OTB DEM handling.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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90 <option value="OTB.MultiResolutionPyramid">OTB.MultiResolutionPyramid: Build a multi-resolution pyramid of the image.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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91 <option value="OTB.LSMSSegmentation">OTB.LSMSSegmentation: This application performs the second step of the exact Large-Scale Mean-Shift segmentation workflow (LSMS) [1].</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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92 <option value="OTB.Despeckle">OTB.Despeckle: Perform speckle noise reduction on SAR image.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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93 <option value="OTB.TrainVectorClassifier">OTB.TrainVectorClassifier: Train a classifier based on labeled geometries and a list of features to consider.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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94 <option value="OTB.SampleSelection">OTB.SampleSelection: Selects samples from a training vector data set.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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95 <option value="OTB.CompareImages">OTB.CompareImages: Estimator between 2 images.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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96 <option value="OTB.VertexComponentAnalysis">OTB.VertexComponentAnalysis: Given a set of mixed spectral vectors, estimatereference substances also known as endmembers using the VertexComponent Analysis algorithm.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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97 <option value="OTB.SplitImage">OTB.SplitImage: Split a N multiband image into N images.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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98 <option value="OTB.DownloadSRTMTiles">OTB.DownloadSRTMTiles: Download or list SRTM tiles</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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99 <option value="OTB.ComputeOGRLayersFeaturesStatistics">OTB.ComputeOGRLayersFeaturesStatistics: Compute statistics of the features in a set of OGR Layers</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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100 <option value="OTB.LSMSSmallRegionsMerging">OTB.LSMSSmallRegionsMerging: This application performs the third (optional) step of the exact Large-Scale Mean-Shift segmentation workflow [1].</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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101 <option value="OTB.PixelValue">OTB.PixelValue: Get the value of a pixel.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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102 <option value="OTB.MorphologicalClassification">OTB.MorphologicalClassification: Performs morphological convex, concave and flat classification on an input image channel</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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103 <option value="OTB.LargeScaleMeanShift">OTB.LargeScaleMeanShift: Large-scale segmentation using MeanShift</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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104 <option value="OTB.TrainRegression">OTB.TrainRegression: Train a classifier from multiple images to perform regression.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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105 <option value="OTB.ContrastEnhancement">OTB.ContrastEnhancement: This application is the implementation of the histogram equalization algorithm. It can be used to enhance contrast in an image or to reduce the dynamic of the image without losing too much contrast. It offers several options as a no data value, a contrast limitation factor, a local version of the algorithm and also a mode to equalize the luminance of the image.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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106 <option value="OTB.SARDecompositions">OTB.SARDecompositions: From one-band complex images (each one related to an element of the Sinclair matrix), returns the selected decomposition.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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107 <option value="OTB.EdgeExtraction">OTB.EdgeExtraction: This application computes edge features on every pixel of the input image selected channel</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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108 <option value="OTB.VectorDataReprojection">OTB.VectorDataReprojection: Reproject a vector data using support image projection reference, or a user specified map projection</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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109 <option value="OTB.ComputeModulusAndPhase">OTB.ComputeModulusAndPhase: This application computes the modulus and the phase of a complex SAR image.</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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110 <option value="OTB.LineSegmentDetection">OTB.LineSegmentDetection: Detect line segments in raster</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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111 <option value="OTB.LocalStatisticExtraction">OTB.LocalStatisticExtraction: Computes local statistical moments on every pixel in the selected channel of the input image</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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112 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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113 <when value="OTB.MorphologicalMultiScaleDecomposition">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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114 <param name="in" label="in" optional="false" help="The input image to be classified." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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115 <param name="outconvex" label="outconvex" optional="false" value="float" help="The output convex image with N bands" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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116 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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117 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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118 <param name="outconcave" label="outconcave" optional="false" value="float" help="The output concave concave with N bands" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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119 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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120 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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121 <param name="outleveling" label="outleveling" optional="false" value="float" help="The output leveling image with N bands" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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122 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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123 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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124 <param name="channel" label="channel" optional="false" value="1" help="The selected channel index for input image" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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125 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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126 <param name="structype" label="structype" optional="false" value="ball" help="Choice of the structuring element type" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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127 <option value="ball">ball</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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128 <option value="cross">cross</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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129 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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130 <param name="radius" label="radius" optional="false" value="5" help="Initial radius of the structuring element (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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131 <param name="step" label="step" optional="false" value="1" help="Radius step along the profile (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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132 <param name="levels" label="levels" optional="false" value="1" help="Number of levels use for multi scale" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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133 <param type="select" name="outconvex_outformat" label="outconvex_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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134 <expand macro="format_options"/>
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135 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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136 <param type="select" name="outconcave_outformat" label="outconcave_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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137 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
138 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
139 <param type="select" name="outleveling_outformat" label="outleveling_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
140 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
141 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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142 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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143 <when value="OTB.Convert">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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144 <param name="in" label="in" optional="false" help="Input image" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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145 <param name="type" label="type" optional="false" value="none" help="Transfer function for the rescaling" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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146 <option value="none">none</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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147 <option value="linear">linear</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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148 <option value="log2">log2</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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149 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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150 <param name="type_linear_gamma" label="type.linear.gamma" optional="true" value="1" help="Gamma correction factor" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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151 <param name="mask" label="mask" optional="false" help="Optional mask to indicate which pixels are valid for computing the histogram quantiles. Only pixels where the mask is less than 0.5 will contribute to the histogram. The mask must have the same dimensions as the input image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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152 <param name="hcp_high" label="hcp.high" optional="true" value="2" help="Quantiles to cut from histogram high values before computing min/max rescaling (in percent, 2 by default)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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153 <param name="hcp_low" label="hcp.low" optional="true" value="2" help="Quantiles to cut from histogram low values before computing min/max rescaling (in percent, 2 by default)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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154 <param name="out" label="out" optional="false" value="uint8" help="Output image" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
155 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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156 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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157 <param name="channels" label="channels" optional="false" value="all" help="It's possible to select the channels of the output image. There are 3 modes, the available choices are:" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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158 <option value="all">all</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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159 <option value="grayscale">grayscale</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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160 <option value="rgb">rgb</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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161 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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162 <param name="channels_grayscale_channel" label="channels.grayscale.channel" optional="false" value="1" help="channels.grayscale.channel" type="integer"/>
1
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ecology
parents: 0
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163 <param name="channels_rgb_red" label="channels.rgb.red" optional="false" value="" help="Red channel index." type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
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164 <param name="channels_rgb_green" label="channels.rgb.green" optional="false" value="" help="Green channel index." type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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parents: 0
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165 <param name="channels_rgb_blue" label="channels.rgb.blue" optional="false" value="" help="Blue channel index." type="integer"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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166 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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167 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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168 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
169 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
170 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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171 <when value="OTB.PredictRegression">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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172 <param name="in" label="in" optional="false" help="The input image to predict." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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173 <param name="mask" label="mask" optional="false" help="The mask allow restricting classification of the input image to the area where mask pixel values are greater than 0." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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174 <param name="model" label="model" optional="false" help="A regression model file (produced by TrainRegression application)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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175 <param name="imstat" label="imstat" optional="false" help="A XML file containing mean and standard deviation to center and reduce samples before prediction (produced by ComputeImagesStatistics application). If this file containsone more band than the sample size, the last stat of last band will beapplied to expand the output predicted value" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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176 <param name="out" label="out" optional="false" value="float" help="Output image containing predicted values" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
177 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
178 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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179 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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180 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
181 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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182 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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183 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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184 <when value="OTB.SARPolarMatrixConvert">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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185 <param name="inc" label="inc" optional="false" help="Input : multi-band complex image" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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186 <param name="inf" label="inf" optional="false" help="Input : multi-band real image" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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187 <param name="inhh" label="inhh" optional="false" help="Input : one-band complex image (HH)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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188 <param name="inhv" label="inhv" optional="false" help="Input : one-band complex image (HV)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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189 <param name="invh" label="invh" optional="false" help="Input : one-band complex image (VH)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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190 <param name="invv" label="invv" optional="false" help="Input : one-band complex image (VV)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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191 <param name="outc" label="outc" optional="true" value="float" help="Output Complex image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
192 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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193 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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194 <param name="outf" label="outf" optional="true" value="float" help="Output Real image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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195 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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196 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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197 <param name="conv" label="conv" optional="false" value="msinclairtocoherency" help="conv" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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198 <option value="msinclairtocoherency">msinclairtocoherency</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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199 <option value="msinclairtocovariance">msinclairtocovariance</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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200 <option value="msinclairtocircovariance">msinclairtocircovariance</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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201 <option value="mcoherencytomueller">mcoherencytomueller</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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202 <option value="mcovariancetocoherencydegree">mcovariancetocoherencydegree</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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203 <option value="mcovariancetocoherency">mcovariancetocoherency</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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204 <option value="mlinearcovariancetocircularcovariance">mlinearcovariancetocircularcovariance</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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205 <option value="muellertomcovariance">muellertomcovariance</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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206 <option value="bsinclairtocoherency">bsinclairtocoherency</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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207 <option value="bsinclairtocovariance">bsinclairtocovariance</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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208 <option value="bsinclairtocircovariance">bsinclairtocircovariance</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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209 <option value="sinclairtomueller">sinclairtomueller</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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210 <option value="muellertopoldegandpower">muellertopoldegandpower</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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211 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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212 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
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213 <param type="select" name="outc_outformat" label="outc_outformat" help="Output format">
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214 <expand macro="format_options"/>
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215 </param>
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216 <param type="select" name="outf_outformat" label="outf_outformat" help="Output format">
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217 <expand macro="format_options"/>
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218 </param>
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219 </when>
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220 <when value="OTB.ImageClassifier">
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221 <param name="in" label="in" optional="false" help="The input image to classify." type="data" format="txt"/>
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222 <param name="mask" label="mask" optional="false" help="The mask allows restricting classification of the input image to the area where mask pixel values are greater than 0." type="data" format="txt"/>
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223 <param name="model" label="model" optional="false" help="A model file (produced by TrainImagesClassifier application, maximal class label = 65535)." type="data" format="txt"/>
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224 <param name="imstat" label="imstat" optional="false" help="A XML file containing mean and standard deviation to center and reduce samples before classification (produced by ComputeImagesStatistics application)." type="data" format="txt"/>
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225 <param name="nodatalabel" label="nodatalabel" optional="true" value="0" help="By default, hidden pixels will have the assigned label 0 in the output image. It's possible to define the label mask by another value, but be careful to not take a label from another class (max. 65535)." type="integer"/>
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226 <param name="out" label="out" optional="false" value="uint8" help="Output image containing class labels" type="select">
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227 <expand macro="out_options"/>
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228 </param>
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229 <param name="confmap" label="confmap" optional="true" value="uint8" help="Confidence map of the produced classification. The confidence index depends on the model : - LibSVM : difference between the two highest probabilities (needs a model with probability estimates, so that classes probabilities can be computed for each sample) - OpenCV * Boost : sum of votes * DecisionTree : (not supported) * GradientBoostedTree : (not supported) * KNearestNeighbors : number of neighbors with the same label * NeuralNetwork : difference between the two highest responses * NormalBayes : (not supported) * RandomForest : Confidence (proportion of votes for the majority class). Margin (normalized difference of the votes of the 2 majority classes) is not available for now. * SVM : distance to margin (only works for 2-class models)" type="select">
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230 <expand macro="out_options"/>
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231 </param>
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232 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
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233 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
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234 <expand macro="format_options"/>
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235 </param>
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236 <param type="select" name="confmap_outformat" label="confmap_outformat" help="Output format">
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237 <expand macro="format_options"/>
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238 </param>
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239 </when>
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240 <when value="OTB.ManageNoData">
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241 <param name="in" label="in" optional="false" help="Input image" type="data" format="txt"/>
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242 <param name="out" label="out" optional="false" value="float" help="Output image" type="select">
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243 <expand macro="out_options"/>
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244 </param>
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245 <param name="usenan" label="usenan" optional="false" value="False" help="If active, the application will consider NaN as no-data values as well" type="boolean" truevalue="True" falsevalue="False"/>
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246 <param name="mode" label="mode" optional="false" value="buildmask" help="Allows choosing between different no-data handling options" type="select">
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247 <option value="buildmask">buildmask</option>
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248 <option value="changevalue">changevalue</option>
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249 <option value="apply">apply</option>
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250 </param>
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251 <param name="mode_buildmask_inv" label="mode.buildmask.inv" optional="false" value="1" help="Value given in the output mask to pixels that are not no data pixels" type="float"/>
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252 <param name="mode_buildmask_outv" label="mode.buildmask.outv" optional="false" value="0" help="Value given in the output mask to pixels that are no data pixels" type="float"/>
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253 <param name="mode_changevalue_newv" label="mode.changevalue.newv" optional="false" value="0" help="The new no-data value" type="float"/>
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254 <param name="mode_apply_mask" label="mode.apply.mask" optional="false" help="Mask to be applied on input image (valid pixels have non null values)" type="data" format="txt"/>
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255 <param name="mode_apply_ndval" label="mode.apply.ndval" optional="false" value="0" help="No Data value used according to the mask image" type="float"/>
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256 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
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257 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
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258 <expand macro="format_options"/>
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259 </param>
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260 </when>
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261 <when value="OTB.SFSTextureExtraction">
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262 <param name="in" label="in" optional="false" help="The input image to compute the features on." type="data" format="txt"/>
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263 <param name="channel" label="channel" optional="false" value="1" help="The selected channel index" type="integer"/>
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264 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
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265 <param name="parameters_spethre" label="parameters.spethre" optional="false" value="50" help="Spectral Threshold" type="float"/>
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266 <param name="parameters_spathre" label="parameters.spathre" optional="false" value="100" help="Spatial Threshold" type="integer"/>
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267 <param name="parameters_nbdir" label="parameters.nbdir" optional="false" value="20" help="Number of Direction" type="integer"/>
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268 <param name="parameters_alpha" label="parameters.alpha" optional="false" value="1" help="Alpha" type="float"/>
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269 <param name="parameters_maxcons" label="parameters.maxcons" optional="false" value="5" help="Ratio Maximum Consideration Number" type="integer"/>
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270 <param name="out" label="out" optional="false" value="float" help="Output image containing the SFS texture features." type="select">
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271 <expand macro="out_options"/>
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272 </param>
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273 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
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274 <expand macro="format_options"/>
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275 </param>
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276 </when>
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277 <when value="OTB.VectorDataExtractROI">
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278 <param name="io_vd" label="io.vd" optional="false" help="Input vector data" type="data" format="txt"/>
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279 <param name="io_in" label="io.in" optional="false" help="Support image that specifies the extracted region" type="data" format="txt"/>
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280 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
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281 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
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282 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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283 <param type="select" name="io_out_outformat" label="io.out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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284 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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285 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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286 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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287 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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288 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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289 </when>
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290 <when value="OTB.HyperspectralUnmixing">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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291 <param name="in" label="in" optional="false" help="The hyperspectral data cube input" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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292 <param name="out" label="out" optional="false" value="float" help="The output abundance map. The abundance fraction are stored in a multispectral image where band N corresponds to the fraction of endmembers N in each pixel." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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293 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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294 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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295 <param name="ie" label="ie" optional="false" help="The endmembers (estimated pure pixels) to use for unmixing. Must be stored as a multispectral image, where each pixel is interpreted as an endmember." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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296 <param name="ua" label="ua" optional="true" value="ucls" help="The algorithm to use for unmixing" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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297 <option value="ucls">ucls</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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298 <option value="ncls">ncls</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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299 <option value="isra">isra</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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300 <option value="mdmdnmf">mdmdnmf</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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301 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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302 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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303 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
304 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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305 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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306 <when value="OTB.HooverCompareSegmentation">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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307 <param name="ingt" label="ingt" optional="false" help="A partial ground truth segmentation image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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308 <param name="inms" label="inms" optional="false" help="A machine segmentation image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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309 <param name="bg" label="bg" optional="false" value="0" help="Label value of the background in the input segmentations" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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310 <param name="th" label="th" optional="false" value="0.75" help="Overlapping threshold used to find Hoover instances." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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311 <param name="outgt" label="outgt" optional="true" value="uint8" help="The colored ground truth output image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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312 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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313 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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314 <param name="outms" label="outms" optional="true" value="uint8" help="The colored machine segmentation output image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
315 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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316 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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317 <param type="select" name="outgt_outformat" label="outgt_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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318 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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319 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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320 <param type="select" name="outms_outformat" label="outms_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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321 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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322 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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323 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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324 <when value="OTB.ComputeConfusionMatrix">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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325 <param name="in" label="in" optional="false" help="The input classification image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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326 <param name="format" label="format" optional="false" value="confusionmatrix" help="Choice of the output format as a contingency table for unsupervised algorithmsor confusion matrix for supervised ones." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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327 <option value="confusionmatrix">confusionmatrix</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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328 <option value="contingencytable">contingencytable</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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329 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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330 <param name="ref" label="ref" optional="false" value="raster" help="Choice of ground truth format" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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331 <option value="raster">raster</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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332 <option value="vector">vector</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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333 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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334 <param name="ref_raster_in" label="ref.raster.in" optional="false" help="Input image containing the ground truth labels" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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335 <param name="ref_raster_nodata" label="ref.raster.nodata" optional="true" value="0" help="Label to be treated as no data in ref raster." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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336 <param name="ref_vector_in" label="ref.vector.in" optional="false" help="Input vector data of the ground truth" type="data" format="txt"/>
1
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337 <param name="ref_vector_field" label="ref.vector.field" optional="false" value="" help="Field name containing the label values" type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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338 <param name="ref_vector_nodata" label="ref.vector.nodata" optional="true" value="0" help="Label to be treated as no data in ref vector. Please note that this value is always used in vector mode, to generate default values. Please set it to a value that does not correspond to a class label." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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339 <param name="nodatalabel" label="nodatalabel" optional="true" value="0" help="Label to be treated as no data in input image" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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340 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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341 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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342 <option value="text/csv">text/csv</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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343 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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344 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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345 <when value="OTB.ConcatenateImages">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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346 <param name="il" label="il" optional="false" help="The list of images to concatenate, must have the same size." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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347 <param name="out" label="out" optional="false" value="float" help="The concatenated output image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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348 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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349 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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350 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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351 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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352 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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353 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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354 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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355 <when value="OTB.SampleAugmentation">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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356 <param name="in" label="in" optional="false" help="Vector data file containing samples (OGR format)" type="data" format="txt"/>
1
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357 <param name="field" label="field" optional="false" value="" help="Name of the field carrying the class name in the input vectors." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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358 <param name="layer" label="layer" optional="true" value="0" help="Layer index to read in the input vector file." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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359 <param name="label" label="label" optional="false" value="1" help="Label of the class of the input file for which new samples will be generated." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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360 <param name="samples" label="samples" optional="false" value="100" help="Number of synthetic samples that will be generated." type="integer"/>
1
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parents: 0
diff changeset
361 <param name="exclude" label="exclude" optional="false" value="" help="List of field names in the input vector data that will not be generated in the output file." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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362 <param name="strategy" label="strategy" optional="false" value="replicate" help="strategy" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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363 <option value="replicate">replicate</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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364 <option value="jitter">jitter</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
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365 <option value="smote">smote</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
366 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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367 <param name="strategy_jitter_stdfactor" label="strategy.jitter.stdfactor" optional="false" value="10" help="The noise added to the input samples will have the standard deviation of the input features divided by the value of this parameter. " type="float"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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parents: 0
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368 <param name="strategy_smote_neighbors" label="strategy.smote.neighbors" optional="false" value="" help="Number of nearest neighbors to be used in the SMOTE algorithm" type="integer"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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369 <param name="seed" label="seed" optional="true" help="Set specific seed. with integer value." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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370 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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371 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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372 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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373 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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374 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
375 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
376 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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377 <when value="OTB.HaralickTextureExtraction">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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378 <param name="in" label="in" optional="false" help="The input image to compute the features on." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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379 <param name="channel" label="channel" optional="false" value="1" help="The selected channel index" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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380 <param name="step" label="step" optional="true" value="1" help="Step (in pixels) to compute output texture values. The first computed pixel position is shifted by (step-1)/2 in both directions." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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381 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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382 <param name="parameters_xrad" label="parameters.xrad" optional="false" value="2" help="X Radius" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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383 <param name="parameters_yrad" label="parameters.yrad" optional="false" value="2" help="Y Radius" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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384 <param name="parameters_xoff" label="parameters.xoff" optional="false" value="1" help="X Offset" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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385 <param name="parameters_yoff" label="parameters.yoff" optional="false" value="1" help="Y Offset" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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386 <param name="parameters_min" label="parameters.min" optional="false" value="0" help="Image Minimum" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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387 <param name="parameters_max" label="parameters.max" optional="false" value="255" help="Image Maximum" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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388 <param name="parameters_nbbin" label="parameters.nbbin" optional="false" value="8" help="Histogram number of bin" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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389 <param name="texture" label="texture" optional="false" value="simple" help="Choice of The Texture Set" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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390 <option value="simple">simple</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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391 <option value="advanced">advanced</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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392 <option value="higher">higher</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
393 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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394 <param name="out" label="out" optional="true" value="float" help="Output image containing the selected texture features." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
395 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
396 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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397 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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398 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
399 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
400 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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401 <when value="OTB.ConvertSensorToGeoPoint">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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402 <param name="in" label="in" optional="false" help="Input sensor image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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403 <param name="input_idx" label="input.idx" optional="false" value="0" help="X coordinate of the point to transform." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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404 <param name="input_idy" label="input.idy" optional="false" value="0" help="Y coordinate of the point to transform." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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405 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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406 <when value="OTB.DSFuzzyModelEstimation">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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407 <param name="psin" label="psin" optional="false" help="Ground truth vector data for positive samples" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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408 <param name="nsin" label="nsin" optional="false" help="Ground truth vector data for negative samples" type="data" format="txt"/>
1
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409 <param name="belsup" label="belsup" optional="false" value="" help="Dempster Shafer study hypothesis to compute belief" type="text"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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410 <param name="plasup" label="plasup" optional="false" value="" help="Dempster Shafer study hypothesis to compute plausibility" type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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411 <param name="cri" label="cri" optional="true" value="((Belief + Plausibility)/2.)" help="Dempster Shafer criterion (by default (belief+plausibility)/2)" type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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412 <param name="wgt" label="wgt" optional="true" value="0.5" help="Coefficient between 0 and 1 to promote undetection or false detections (default 0.5)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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413 <param name="initmod" label="initmod" optional="false" help="Initialization model (xml file) to be used. If the xml initialization model is set, the descriptor list is not used (specified using the option -desclist)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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414 <param name="desclist" label="desclist" optional="true" help="List of the descriptors to be used in the model (must be specified to perform an automatic initialization)" type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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415 <param name="maxnbit" label="maxnbit" optional="true" value="200" help="Maximum number of optimizer iteration (default 200)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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416 <param name="optobs" label="optobs" optional="false" value="False" help="Activate the optimizer observer" type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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417 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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418 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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419 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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420 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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421 <when value="OTB.OrthoRectification">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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422 <param name="io_in" label="io.in" optional="false" help="The input image to ortho-rectify" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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423 <param name="io_out" label="io.out" optional="false" value="float" help="The ortho-rectified output image" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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424 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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425 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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426 <param name="map" label="map" optional="false" value="utm" help="Defines the map projection to be used." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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427 <option value="utm">utm</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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428 <option value="lambert2">lambert2</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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429 <option value="lambert93">lambert93</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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430 <option value="wgs">wgs</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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431 <option value="epsg">epsg</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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432 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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433 <param name="map_utm_zone" label="map.utm.zone" optional="false" value="31" help="The zone number ranges from 1 to 60 and allows defining the transverse mercator projection (along with the hemisphere)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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434 <param name="map_utm_northhem" label="map.utm.northhem" optional="false" value="False" help="The transverse mercator projections are defined by their zone number as well as the hemisphere. Activate this parameter if your image is in the northern hemisphere." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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435 <param name="map_epsg_code" label="map.epsg.code" optional="false" value="4326" help="See www.spatialreference.org to find which EPSG code is associated to your projection" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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436 <param name="outputs_mode" label="outputs.mode" optional="false" value="auto" help="outputs.mode" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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437 <option value="auto">auto</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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438 <option value="autosize">autosize</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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439 <option value="autospacing">autospacing</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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440 <option value="outputroi">outputroi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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441 <option value="orthofit">orthofit</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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442 </param>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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443 <param name="outputs_ulx" label="outputs.ulx" optional="false" value="" help="Cartographic X coordinate of upper-left corner (meters for cartographic projections, degrees for geographic ones)" type="float"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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444 <param name="outputs_uly" label="outputs.uly" optional="false" value="" help="Cartographic Y coordinate of the upper-left corner (meters for cartographic projections, degrees for geographic ones)" type="float"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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445 <param name="outputs_sizex" label="outputs.sizex" optional="false" value="" help="Size of projected image along X (in pixels)" type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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446 <param name="outputs_sizey" label="outputs.sizey" optional="false" value="" help="Size of projected image along Y (in pixels)" type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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447 <param name="outputs_spacingx" label="outputs.spacingx" optional="false" value="" help="Size of each pixel along X axis (meters for cartographic projections, degrees for geographic ones)" type="float"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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448 <param name="outputs_spacingy" label="outputs.spacingy" optional="false" value="" help="Size of each pixel along Y axis (meters for cartographic projections, degrees for geographic ones)" type="float"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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449 <param name="outputs_lrx" label="outputs.lrx" optional="true" help="Cartographic X coordinate of the lower-right corner (meters for cartographic projections, degrees for geographic ones)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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450 <param name="outputs_lry" label="outputs.lry" optional="true" help="Cartographic Y coordinate of the lower-right corner (meters for cartographic projections, degrees for geographic ones)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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451 <param name="outputs_ortho" label="outputs.ortho" optional="false" help="A model ortho-image that can be used to compute size, origin and spacing of the output" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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452 <param name="outputs_isotropic" label="outputs.isotropic" optional="false" value="False" help="Default spacing (pixel size) values are estimated from the sensor modeling of the image. It can therefore result in a non-isotropic spacing. This option allows you to force default values to be isotropic (in this case, the minimum of spacing in both direction is applied. Values overridden by user are not affected by this option." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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453 <param name="outputs_default" label="outputs.default" optional="true" value="0" help="Default value to write when outside of input image." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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454 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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455 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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456 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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457 <param name="interpolator" label="interpolator" optional="false" value="bco" help="This group of parameters allows one to define how the input image will be interpolated during resampling." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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458 <option value="bco">bco</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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459 <option value="nn">nn</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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460 <option value="linear">linear</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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461 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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462 <param name="interpolator_bco_radius" label="interpolator.bco.radius" optional="true" value="10" help="Enabling RPC modeling allows one to speed-up SPOT5 ortho-rectification. Value is the number of control points per axis for RPC estimation" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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463 <param name="opt_ram" label="opt.ram" optional="true" value="128" help="This allows setting the maximum amount of RAM available for processing. As the writing task is time consuming, it is better to write large pieces of data, which can be achieved by increasing this parameter (pay attention to your system capabilities)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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464 <param name="opt_gridspacing" label="opt.gridspacing" optional="true" value="4" help="Resampling is done according to a coordinate mapping deformation grid, whose pixel size is set by this parameter, and expressed in the coordinate system of the output image The closer to the output spacing this parameter is, the more precise will be the ortho-rectified image,but increasing this parameter will reduce processing time." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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465 <param type="select" name="io_out_outformat" label="io.out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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466 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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467 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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468 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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469 <when value="OTB.BinaryMorphologicalOperation">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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470 <param name="in" label="in" optional="false" help="The input image to be filtered." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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471 <param name="out" label="out" optional="false" value="float" help="Output image" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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472 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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473 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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474 <param name="channel" label="channel" optional="false" value="1" help="The selected channel index" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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475 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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476 <param name="structype" label="structype" optional="false" value="ball" help="Choice of the structuring element type" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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477 <option value="ball">ball</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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478 <option value="cross">cross</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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479 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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480 <param name="structype_ball_xradius" label="structype.ball.xradius" optional="false" value="5" help="The structuring element radius along the X axis." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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481 <param name="structype_ball_yradius" label="structype.ball.yradius" optional="false" value="5" help="The structuring element radius along the y axis." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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482 <param name="filter" label="filter" optional="false" value="dilate" help="Choice of the morphological operation" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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483 <option value="dilate">dilate</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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484 <option value="erode">erode</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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485 <option value="opening">opening</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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486 <option value="closing">closing</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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487 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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488 <param name="filter_dilate_foreval" label="filter.dilate.foreval" optional="false" value="1" help="Set the foreground value, default is 1.0." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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489 <param name="filter_dilate_backval" label="filter.dilate.backval" optional="false" value="0" help="Set the background value, default is 0.0." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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490 <param name="filter_erode_foreval" label="filter.erode.foreval" optional="false" value="1" help="Set the foreground value, default is 1.0." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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491 <param name="filter_erode_backval" label="filter.erode.backval" optional="false" value="0" help="Set the background value, default is 0.0." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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492 <param name="filter_opening_foreval" label="filter.opening.foreval" optional="false" value="1" help="Set the foreground value, default is 1.0." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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493 <param name="filter_opening_backval" label="filter.opening.backval" optional="false" value="0" help="Set the background value, default is 0.0." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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494 <param name="filter_closing_foreval" label="filter.closing.foreval" optional="false" value="1" help="Set the foreground value, default is 1.0." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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495 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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496 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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497 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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498 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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499 <when value="OTB.BlockMatching">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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500 <param name="io_inleft" label="io.inleft" optional="false" help="The left input image (reference).It should have the same size and same physical space as the right input. This image can be generated by GridBasedImageResampling" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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501 <param name="io_inright" label="io.inright" optional="false" help="The right input (secondary).It should have the same size and same physical space as the left input. This image can be generated by GridBasedImageResampling" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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502 <param name="io_out" label="io.out" optional="false" value="float" help="An image containing the estimated disparities as well as the metric values if the option is used. If no metric is output and no sub-pixel interpolation is done, pixel type canbe a signed integer. In the other cases, floating point pixel is advised." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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503 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
504 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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505 <param name="io_outmask" label="io.outmask" optional="true" value="uint8" help="An output mask image corresponding to all citerions (see masking parameters). Only required if variance threshold or nodata criterions are set. Output pixel type is unsigned 8bit by default." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
506 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
507 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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508 <param name="io_outmetric" label="io.outmetric" optional="false" value="False" help="If enabled, the output image will have a third component with metric optimal values" type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
509 <param name="mask_inleft" label="mask.inleft" optional="false" help="This parameter allows providing a custom mask for the left image. Block matching will be only perform on pixels inside the mask (non-zero values)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
510 <param name="mask_inright" label="mask.inright" optional="false" help="This parameter allows providing a custom mask for the right image. Block matching will be perform only on pixels inside the mask (non-zero values)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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511 <param name="mask_nodata" label="mask.nodata" optional="true" value="0" help="This parameter allows discarding pixels whose value is equal to the user-defined no-data value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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512 <param name="mask_variancet" label="mask.variancet" optional="true" value="100" help="This parameter allows discarding pixels whose local variance is too small (the size of the neighborhood is given by the radius parameter)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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513 <param name="bm_metric" label="bm.metric" optional="false" value="ssd" help="Metric to evaluate matching between two local windows." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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514 <option value="ssd">ssd</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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515 <option value="ncc">ncc</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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516 <option value="lp">lp</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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517 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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518 <param name="bm_metric_lp_p" label="bm.metric.lp.p" optional="false" value="1" help="Value of the p parameter in Lp pseudo-norm (must be positive)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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519 <param name="bm_radius" label="bm.radius" optional="false" value="3" help="The radius (in pixels) of blocks in Block-Matching" type="integer"/>
1
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520 <param name="bm_minhd" label="bm.minhd" optional="false" value="" help="Minimum horizontal disparity to explore (can be negative)" type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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diff changeset
521 <param name="bm_maxhd" label="bm.maxhd" optional="false" value="" help="Maximum horizontal disparity to explore (can be negative)" type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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parents: 0
diff changeset
522 <param name="bm_minvd" label="bm.minvd" optional="false" value="" help="Minimum vertical disparity to explore (can be negative)" type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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523 <param name="bm_maxvd" label="bm.maxvd" optional="false" value="" help="Maximum vertical disparity to explore (can be negative)" type="integer"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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524 <param name="bm_subpixel" label="bm.subpixel" optional="false" value="none" help="Estimate disparities with sub-pixel precision" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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525 <option value="none">none</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
526 <option value="parabolic">parabolic</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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527 <option value="triangular">triangular</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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528 <option value="dichotomy">dichotomy</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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529 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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530 <param name="bm_step" label="bm.step" optional="true" value="1" help="Location step between computed disparities. Disparities will be computed every 'step' pixels in the left image (step for both rows and columns). For instance, a value of 1 corresponds to the classic dense disparity map." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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531 <param name="bm_startx" label="bm.startx" optional="true" value="0" help="X start index of the subsampled grid (wrt the input image grid). See parameter bm.step" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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532 <param name="bm_starty" label="bm.starty" optional="true" value="0" help="Y start index of the subsampled grid (wrt the input image grid). See parameter bm.step" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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533 <param name="bm_medianfilter_radius" label="bm.medianfilter.radius" optional="true" help="Radius (in pixels) for median filter" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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534 <param name="bm_medianfilter_incoherence" label="bm.medianfilter.incoherence" optional="true" help="Incoherence threshold between original and filtered disparity" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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535 <param name="bm_initdisp" label="bm.initdisp" optional="false" value="none" help="bm.initdisp" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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536 <option value="none">none</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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537 <option value="uniform">uniform</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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538 <option value="maps">maps</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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539 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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540 <param name="bm_initdisp_uniform_hdisp" label="bm.initdisp.uniform.hdisp" optional="false" value="0" help="Value of the uniform horizontal disparity initial estimate (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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541 <param name="bm_initdisp_uniform_vdisp" label="bm.initdisp.uniform.vdisp" optional="false" value="0" help="Value of the uniform vertical disparity initial estimate (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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542 <param name="bm_initdisp_uniform_hrad" label="bm.initdisp.uniform.hrad" optional="false" value="0" help="Horizontal exploration radius around the initial disparity estimate (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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543 <param name="bm_initdisp_uniform_vrad" label="bm.initdisp.uniform.vrad" optional="false" value="0" help="Vertical exploration radius around the initial disparity estimate (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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544 <param name="bm_initdisp_maps_hmap" label="bm.initdisp.maps.hmap" optional="false" help="Map of the initial horizontal disparities" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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545 <param name="bm_initdisp_maps_vmap" label="bm.initdisp.maps.vmap" optional="false" help="Map of the initial vertical disparities" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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546 <param name="bm_initdisp_maps_hrad" label="bm.initdisp.maps.hrad" optional="false" value="0" help="Horizontal exploration radius around the initial disparity estimate (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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547 <param name="bm_initdisp_maps_vrad" label="bm.initdisp.maps.vrad" optional="false" value="0" help="Vertical exploration radius around the initial disparity estimate (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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548 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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549 <param type="select" name="io_out_outformat" label="io.out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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550 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
551 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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552 <param type="select" name="io_outmask_outformat" label="io.outmask_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
553 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
554 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
555 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
556 <when value="OTB.KmzExport">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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557 <param name="in" label="in" optional="false" help="Input image" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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558 <param name="tilesize" label="tilesize" optional="true" value="512" help="Size of the tiles in the kmz product, in number of pixels (default = 512)." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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559 <param name="logo" label="logo" optional="false" help="Path to the image logo to add to the KMZ product." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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560 <param name="legend" label="legend" optional="false" help="Path to the image legend to add to the KMZ product." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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561 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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562 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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563 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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564 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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565 <option value="application/vnd.google-earth.kmz">application/vnd.google-earth.kmz</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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566 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
567 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
568 <when value="OTB.ConnectedComponentSegmentation">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
569 <param name="in" label="in" optional="false" help="The image to segment." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
570 <param name="mask" label="mask" optional="true" help="Mask mathematical expression (only if support image is given)" type="text"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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parents: 0
diff changeset
571 <param name="expr" label="expr" optional="false" value="" help="Formula used for connected component segmentation" type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
572 <param name="minsize" label="minsize" optional="true" value="2" help="Min object size (area in pixel)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
573 <param name="obia" label="obia" optional="true" help="OBIA mathematical expression" type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
574 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
575 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
576 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
577 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
578 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
579 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
580 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
581 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
582 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
583 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
584 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
585 <when value="OTB.TrainImagesClassifier">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
586 <param name="io_il" label="io.il" optional="false" help="A list of input images." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
587 <param name="io_vd" label="io.vd" optional="false" help="A list of vector data to select the training samples." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
588 <param name="io_valid" label="io.valid" optional="false" help="A list of vector data to select the validation samples." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
589 <param name="io_imstat" label="io.imstat" optional="false" help="XML file containing mean and variance of each feature." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
590 <param name="cleanup" label="cleanup" optional="false" value="False" help="If activated, the application will try to clean all temporary files it created" type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
591 <param name="sample_mt" label="sample.mt" optional="false" value="1000" help="Maximum size per class (in pixels) of the training sample list (default = 1000) (no limit = -1). If equal to -1, then the maximal size of the available training sample list per class will be equal to the surface area of the smallest class multiplied by the training sample ratio." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
592 <param name="sample_mv" label="sample.mv" optional="false" value="1000" help="Maximum size per class (in pixels) of the validation sample list (default = 1000) (no limit = -1). If equal to -1, then the maximal size of the available validation sample list per class will be equal to the surface area of the smallest class multiplied by the validation sample ratio." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
593 <param name="sample_bm" label="sample.bm" optional="false" value="1" help="Bound the number of samples for each class by the number of available samples by the smaller class. Proportions between training and validation are respected. Default is true (=1)." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
594 <param name="sample_vtr" label="sample.vtr" optional="false" value="0.5" help="Ratio between training and validation samples (0.0 = all training, 1.0 = all validation) (default = 0.5)." type="float"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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parents: 0
diff changeset
595 <param name="sample_vfn" label="sample.vfn" optional="false" value="" help="Field containing the class id for supervision. The values in this field shall be cast into integers." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
596 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
597 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
598 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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599 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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600 <param name="classifier" label="classifier" optional="false" value="libsvm" help="Choice of the classifier to use for the training." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
601 <option value="libsvm">libsvm</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
602 <option value="boost">boost</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
603 <option value="dt">dt</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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604 <option value="ann">ann</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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605 <option value="bayes">bayes</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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606 <option value="rf">rf</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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607 <option value="knn">knn</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
608 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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609 <param name="classifier_libsvm_k" label="classifier.libsvm.k" optional="false" value="linear" help="SVM Kernel Type." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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610 <option value="linear">linear</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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611 <option value="rbf">rbf</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
612 <option value="poly">poly</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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613 <option value="sigmoid">sigmoid</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
614 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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615 <param name="classifier_libsvm_m" label="classifier.libsvm.m" optional="false" value="csvc" help="Type of SVM formulation." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
616 <option value="csvc">csvc</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
617 <option value="nusvc">nusvc</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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618 <option value="oneclass">oneclass</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
619 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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620 <param name="classifier_libsvm_c" label="classifier.libsvm.c" optional="false" value="1" help="SVM models have a cost parameter C (1 by default) to control the trade-off between training errors and forcing rigid margins." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
621 <param name="classifier_libsvm_nu" label="classifier.libsvm.nu" optional="false" value="0.5" help="Cost parameter Nu, in the range 0..1, the larger the value, the smoother the decision." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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622 <param name="classifier_libsvm_opt" label="classifier.libsvm.opt" optional="false" value="False" help="SVM parameters optimization flag." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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623 <param name="classifier_libsvm_prob" label="classifier.libsvm.prob" optional="false" value="False" help="Probability estimation flag." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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624 <param name="classifier_boost_t" label="classifier.boost.t" optional="false" value="real" help="Type of Boosting algorithm." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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625 <option value="discrete">discrete</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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626 <option value="real">real</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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627 <option value="logit">logit</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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628 <option value="gentle">gentle</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
629 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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630 <param name="classifier_boost_w" label="classifier.boost.w" optional="false" value="100" help="The number of weak classifiers." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
631 <param name="classifier_boost_r" label="classifier.boost.r" optional="false" value="0.95" help="A threshold between 0 and 1 used to save computational time. Samples with summary weight &amp;lt;= (1 - weight_trim_rate) do not participate in the next iteration of training. Set this parameter to 0 to turn off this functionality." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
632 <param name="classifier_boost_m" label="classifier.boost.m" optional="false" value="1" help="Maximum depth of the tree." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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633 <param name="classifier_dt_max" label="classifier.dt.max" optional="false" value="10" help="The training algorithm attempts to split each node while its depth is smaller than the maximum possible depth of the tree. The actual depth may be smaller if the other termination criteria are met, and/or if the tree is pruned." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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634 <param name="classifier_dt_min" label="classifier.dt.min" optional="false" value="10" help="If the number of samples in a node is smaller than this parameter, then this node will not be split." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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635 <param name="classifier_dt_ra" label="classifier.dt.ra" optional="false" value="0.01" help="If all absolute differences between an estimated value in a node and the values of the train samples in this node are smaller than this regression accuracy parameter, then the node will not be split further." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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636 <param name="classifier_dt_cat" label="classifier.dt.cat" optional="false" value="10" help="Cluster possible values of a categorical variable into K &amp;lt;= cat clusters to find a suboptimal split." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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637 <param name="classifier_dt_f" label="classifier.dt.f" optional="false" value="0" help="If cv_folds &gt; 1, then it prunes a tree with K-fold cross-validation where K is equal to cv_folds." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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638 <param name="classifier_dt_r" label="classifier.dt.r" optional="false" value="False" help="If true, then a pruning will be harsher. This will make a tree more compact and more resistant to the training data noise but a bit less accurate." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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639 <param name="classifier_dt_t" label="classifier.dt.t" optional="false" value="False" help="If true, then pruned branches are physically removed from the tree." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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640 <param name="classifier_ann_t" label="classifier.ann.t" optional="false" value="reg" help="Type of training method for the multilayer perceptron (MLP) neural network." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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641 <option value="back">back</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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642 <option value="reg">reg</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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643 </param>
1
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644 <param name="classifier_ann_sizes" label="classifier.ann.sizes" optional="false" value="" help="The number of neurons in each intermediate layer (excluding input and output layers)." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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645 <param name="classifier_ann_f" label="classifier.ann.f" optional="false" value="sig" help="This function determine whether the output of the node is positive or not depending on the output of the transfert function." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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646 <option value="ident">ident</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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647 <option value="sig">sig</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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648 <option value="gau">gau</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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649 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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650 <param name="classifier_ann_a" label="classifier.ann.a" optional="false" value="1" help="Alpha parameter of the activation function (used only with sigmoid and gaussian functions)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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651 <param name="classifier_ann_b" label="classifier.ann.b" optional="false" value="1" help="Beta parameter of the activation function (used only with sigmoid and gaussian functions)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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652 <param name="classifier_ann_bpdw" label="classifier.ann.bpdw" optional="false" value="0.1" help="Strength of the weight gradient term in the BACKPROP method. The recommended value is about 0.1." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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653 <param name="classifier_ann_bpms" label="classifier.ann.bpms" optional="false" value="0.1" help="Strength of the momentum term (the difference between weights on the 2 previous iterations). This parameter provides some inertia to smooth the random fluctuations of the weights. It can vary from 0 (the feature is disabled) to 1 and beyond. The value 0.1 or so is good enough." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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654 <param name="classifier_ann_rdw" label="classifier.ann.rdw" optional="false" value="0.1" help="Initial value Delta_0 of update-values Delta_" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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655 <param name="classifier_ann_rdwm" label="classifier.ann.rdwm" optional="false" value="1e-07" help="Update-values lower limit Delta_" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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656 <param name="classifier_ann_term" label="classifier.ann.term" optional="false" value="all" help="Termination criteria." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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657 <option value="iter">iter</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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658 <option value="eps">eps</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
659 <option value="all">all</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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660 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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661 <param name="classifier_ann_eps" label="classifier.ann.eps" optional="false" value="0.01" help="Epsilon value used in the Termination criteria." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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662 <param name="classifier_ann_iter" label="classifier.ann.iter" optional="false" value="1000" help="Maximum number of iterations used in the Termination criteria." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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663 <param name="classifier_rf_max" label="classifier.rf.max" optional="false" value="5" help="The depth of the tree. A low value will likely underfit and conversely a high value will likely overfit. The optimal value can be obtained using cross validation or other suitable methods." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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664 <param name="classifier_rf_min" label="classifier.rf.min" optional="false" value="10" help="If the number of samples in a node is smaller than this parameter, then the node will not be split. A reasonable value is a small percentage of the total data e.g. 1 percent." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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665 <param name="classifier_rf_ra" label="classifier.rf.ra" optional="false" value="0" help="If all absolute differences between an estimated value in a node and the values of the train samples in this node are smaller than this regression accuracy parameter, then the node will not be split." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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666 <param name="classifier_rf_cat" label="classifier.rf.cat" optional="false" value="10" help="Cluster possible values of a categorical variable into K &amp;lt;= cat clusters to find a suboptimal split." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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667 <param name="classifier_rf_var" label="classifier.rf.var" optional="false" value="0" help="The size of the subset of features, randomly selected at each tree node, that are used to find the best split(s). If you set it to 0, then the size will be set to the square root of the total number of features." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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668 <param name="classifier_rf_nbtrees" label="classifier.rf.nbtrees" optional="false" value="100" help="The maximum number of trees in the forest. Typically, the more trees you have, the better the accuracy. However, the improvement in accuracy generally diminishes and reaches an asymptote for a certain number of trees. Also to keep in mind, increasing the number of trees increases the prediction time linearly." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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669 <param name="classifier_rf_acc" label="classifier.rf.acc" optional="false" value="0.01" help="Sufficient accuracy (OOB error)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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670 <param name="classifier_knn_k" label="classifier.knn.k" optional="false" value="32" help="The number of neighbors to use." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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671 <param name="rand" label="rand" optional="true" help="Set specific seed. with integer value." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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672 <param type="select" name="io_out_outformat" label="io.out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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673 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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674 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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675 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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676 <param type="select" name="io_confmatout_outformat" label="io.confmatout_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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677 <option value="text/csv">text/csv</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
678 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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679 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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680 <when value="OTB.MultivariateAlterationDetector">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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681 <param name="in1" label="in1" optional="false" help="Multiband image of the scene before perturbations" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
682 <param name="in2" label="in2" optional="false" help="Mutliband image of the scene after perturbations." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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683 <param name="out" label="out" optional="false" value="float" help="Multiband image containing change maps. Each map will be in the range [-1,1], so a floating point output type is advised." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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684 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
685 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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686 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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687 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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688 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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689 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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690 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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691 <when value="OTB.ComputePolylineFeatureFromImage">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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692 <param name="in" label="in" optional="false" help="An image to compute the descriptors on." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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693 <param name="vd" label="vd" optional="false" help="Vector data containing the polylines where the features will be computed." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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694 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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695 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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696 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
1
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697 <param name="expr" label="expr" optional="false" value="" help="The feature formula (b1 &amp;lt; 0.3) where b1 is the standard name of input image first band" type="text"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
698 <param name="field" label="field" optional="false" value="" help="The field name corresponding to the feature codename (NONDVI, ROADSA...)" type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
699 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
700 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
701 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
702 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
703 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
704 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
705 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
706 <when value="OTB.MultiImageSamplingRate">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
707 <param name="il" label="il" optional="false" value="smallest" help="strategy" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
708 <option value="byclass">byclass</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
709 <option value="constant">constant</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
710 <option value="smallest">smallest</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
711 <option value="percent">percent</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
712 <option value="total">total</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
713 <option value="all">all</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
714 </param>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
715 <param name="strategy_byclass_in" label="strategy.byclass.in" optional="false" value="" help="Number of samples for all classes.In the case of the custom multi-image mode, several values can be given for each image." type="text"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
716 <param name="strategy_percent_p" label="strategy.percent.p" optional="false" value="" help="The percentage(s) to use In the case of the custom multi-image mode, several values can be given for each image." type="text"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
717 <param name="strategy_total_v" label="strategy.total.v" optional="false" value="" help="The number of samples to generateIn the case of the custom multi-image mode, several values can be given for each image." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
718 <param name="mim" label="mim" optional="false" value="proportional" help="mim" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
719 <option value="proportional">proportional</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
720 <option value="equal">equal</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
721 <option value="custom">custom</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
722 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
723 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
724 <option value="text/csv">text/csv</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
725 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
726 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
727 <when value="OTB.Segmentation">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
728 <param name="in" label="in" optional="false" help="The input image to segment" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
729 <param name="filter" label="filter" optional="false" value="meanshift" help="Choice of segmentation algorithm (mean-shift by default)" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
730 <option value="meanshift">meanshift</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
731 <option value="cc">cc</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
732 <option value="watershed">watershed</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
733 <option value="mprofiles">mprofiles</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
734 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
735 <param name="filter_meanshift_spatialr" label="filter.meanshift.spatialr" optional="false" value="5" help="Spatial radius of the neighborhood." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
736 <param name="filter_meanshift_ranger" label="filter.meanshift.ranger" optional="false" value="15" help="Range radius defining the radius (expressed in radiometry unit) in the multispectral space." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
737 <param name="filter_meanshift_thres" label="filter.meanshift.thres" optional="false" value="0.1" help="Algorithm iterative scheme will stop if mean-shift vector is below this threshold or if iteration number reached maximum number of iterations." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
738 <param name="filter_meanshift_maxiter" label="filter.meanshift.maxiter" optional="false" value="100" help="Algorithm iterative scheme will stop if convergence hasn't been reached after the maximum number of iterations." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
739 <param name="filter_meanshift_minsize" label="filter.meanshift.minsize" optional="false" value="100" help="Minimum size of a region (in pixel unit) in segmentation. Smaller clusters will be merged to the neighboring cluster with the closest radiometry. If set to 0 no pruning is done." type="integer"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
740 <param name="filter_cc_expr" label="filter.cc.expr" optional="false" value="" help="User defined connection condition, written as a mathematical expression. Available variables are p(i)b(i), intensity_p(i) and distance (example of expression : distance &amp;lt; 10 )" type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
741 <param name="filter_watershed_threshold" label="filter.watershed.threshold" optional="false" value="0.01" help="Depth threshold Units in percentage of the maximum depth in the image." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
742 <param name="filter_watershed_level" label="filter.watershed.level" optional="false" value="0.1" help="flood level for generating the merge tree from the initial segmentation (between 0 and 1)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
743 <param name="filter_mprofiles_size" label="filter.mprofiles.size" optional="false" value="5" help="Size of the profiles" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
744 <param name="filter_mprofiles_start" label="filter.mprofiles.start" optional="false" value="1" help="Initial radius of the structuring element (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
745 <param name="filter_mprofiles_step" label="filter.mprofiles.step" optional="false" value="1" help="Radius step along the profile (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
746 <param name="filter_mprofiles_sigma" label="filter.mprofiles.sigma" optional="false" value="1" help="Profiles values under the threshold will be ignored." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
747 <param name="mode" label="mode" optional="false" value="vector" help="Choice of processing mode, either raster or large-scale." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
748 <option value="vector">vector</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
749 <option value="raster">raster</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
750 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
751 <param name="mode_vector_outmode" label="mode.vector.outmode" optional="false" value="ulco" help="This allows one to set the writing behaviour for the output vector file. Please note that the actual behaviour depends on the file format." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
752 <option value="ulco">ulco</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
753 <option value="ovw">ovw</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
754 <option value="ulovw">ulovw</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
755 <option value="ulu">ulu</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
756 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
757 <param name="mode_vector_inmask" label="mode.vector.inmask" optional="false" help="Only pixels whose mask value is strictly positive will be segmented." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
758 <param name="mode_vector_neighbor" label="mode.vector.neighbor" optional="false" value="False" help="Activate 8-Neighborhood connectivity (default is 4)." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
759 <param name="mode_vector_stitch" label="mode.vector.stitch" optional="false" value="False" help="Scan polygons on each side of tiles and stitch polygons which connect by more than one pixel." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
760 <param name="mode_vector_minsize" label="mode.vector.minsize" optional="true" value="1" help="Objects whose size is below the minimum object size (area in pixels) will be ignored during vectorization." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
761 <param name="mode_vector_simplify" label="mode.vector.simplify" optional="true" value="0.1" help="Simplify polygons according to a given tolerance (in pixel). This option allows reducing the size of the output file or database." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
762 <param name="mode_vector_layername" label="mode.vector.layername" optional="false" value="layer" help="Name of the layer in the vector file or database (default is Layer)." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
763 <param name="mode_vector_fieldname" label="mode.vector.fieldname" optional="false" value="DN" help="Name of the field holding the geometry index in the output vector file or database." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
764 <param name="mode_vector_tilesize" label="mode.vector.tilesize" optional="false" value="1024" help="User defined tiles size for tile-based segmentation. Optimal tile size is selected according to available RAM if null." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
765 <param name="mode_vector_startlabel" label="mode.vector.startlabel" optional="false" value="1" help="Starting value of the geometry index field" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
766 <param name="mode_vector_ogroptions" label="mode.vector.ogroptions" optional="true" help="A list of layer creation options in the form KEY=VALUE that will be passed directly to OGR without any validity checking. Options may depend on the file format, and can be found in OGR documentation." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
767 <param name="mode_raster_out" label="mode.raster.out" optional="false" value="uint8" help="The output labeled image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
768 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
769 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
770 <param type="select" name="mode_vector_out_outformat" label="mode.vector.out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
771 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
772 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
773 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
774 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
775 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
776 <param type="select" name="mode_raster_out_outformat" label="mode.raster.out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
777 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
778 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
779 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
780 <when value="OTB.VectorDataDSValidation">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
781 <param name="in" label="in" optional="false" help="Input vector data to validate" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
782 <param name="descmod" label="descmod" optional="false" help="Fuzzy descriptors model (xml file)" type="data" format="txt"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
783 <param name="belsup" label="belsup" optional="false" value="" help="Dempster Shafer study hypothesis to compute belief" type="text"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
784 <param name="plasup" label="plasup" optional="false" value="" help="Dempster Shafer study hypothesis to compute plausibility" type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
785 <param name="cri" label="cri" optional="true" value="((Belief + Plausibility)/2.)" help="Dempster Shafer criterion (by default (belief+plausibility)/2)" type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
786 <param name="thd" label="thd" optional="true" value="0.5" help="Criterion threshold (default 0.5)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
787 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
788 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
789 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
790 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
791 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
792 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
793 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
794 <when value="OTB.OGRLayerClassifier">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
795 <param name="inshp" label="inshp" optional="false" help="Name of the input shapefile" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
796 <param name="instats" label="instats" optional="false" help="XML file containing mean and variance of each feature." type="data" format="txt"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
797 <param name="feat" label="feat" optional="false" value="" help="Features to be calculated" type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
798 <param name="cfield" label="cfield" optional="false" value="predicted" help="Field containing the predicted class" type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
799 <param type="select" name="insvm_outformat" label="insvm_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
800 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
801 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
802 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
803 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
804 <when value="OTB.OSMDownloader">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
805 <param name="support" label="support" optional="false" help="Image used to derive the spatial extent to be requested from OSM server (the bounding box of the extent is used). Be aware that a request with a large extent may be rejected by the server." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
806 <param name="key" label="key" optional="true" help="OSM tag key to extract (highway, building...). It defines a category to select features." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
807 <param name="value" label="value" optional="true" help="OSM tag value to extract (motorway, footway...). It defines the type of feature to select inside a category." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
808 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
809 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
810 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
811 <param name="printclasses" label="printclasses" optional="false" value="False" help="Print the key/value classes available for the selected support image. If enabled, the OSM tag Key (-key) and the output (-out) become optional" type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
812 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
813 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
814 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
815 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
816 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
817 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
818 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
819 <when value="OTB.DisparityMapToElevationMap">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
820 <param name="io_in" label="io.in" optional="false" help="The input disparity map (horizontal disparity in first band, vertical in second). This map can be computed by BlockMatching application." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
821 <param name="io_left" label="io.left" optional="false" help="Left image in original (sensor) geometry. Only the geometric model of this image will be used, not the pixel values." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
822 <param name="io_right" label="io.right" optional="false" help="Right image in original (sensor) geometry. Only the geometric model of this image will be used, not the pixel values." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
823 <param name="io_lgrid" label="io.lgrid" optional="false" help="Left epipolar grid (deformation grid between left sensor et disparity spaces)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
824 <param name="io_rgrid" label="io.rgrid" optional="false" help="Right epipolar grid (deformation grid between right sensor et disparity spaces)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
825 <param name="io_out" label="io.out" optional="false" value="float" help="Output elevation map in ground projection. Elevation values are in meters. Floating point pixel type are expected." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
826 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
827 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
828 <param name="io_mask" label="io.mask" optional="false" help="Masked disparity pixels won't be projected (mask values equal to zero)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
829 <param name="step" label="step" optional="false" value="5" help="Spacing of the output elevation map (in meters)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
830 <param name="hmin" label="hmin" optional="false" value="0" help="Minimum elevation expected (in meters)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
831 <param name="hmax" label="hmax" optional="false" value="100" help="Maximum elevation expected (in meters)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
832 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
833 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
834 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
835 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
836 <param type="select" name="io_out_outformat" label="io.out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
837 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
838 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
839 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
840 <when value="OTB.VectorClassifier">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
841 <param name="in" label="in" optional="false" help="The input vector data file to classify." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
842 <param name="instat" label="instat" optional="false" help="A XML file containing mean and standard deviation to centerand reduce samples before classification, produced by ComputeImagesStatistics application." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
843 <param name="model" label="model" optional="false" help="Model file produced by TrainVectorClassifier application." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
844 <param name="cfield" label="cfield" optional="false" value="predicted" help="Field containing the predicted class.Only geometries with this field available will be taken into account.The field is added either in the input file (if 'out' off) or in the output file.Caution, the 'cfield' must not exist in the input file if you are updating the file." type="text"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
845 <param name="feat" label="feat" optional="false" value="" help="List of field names in the input vector data used as features for training. Put the same field names as the TrainVectorClassifier application." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
846 <param name="confmap" label="confmap" optional="false" value="False" help="Confidence map of the produced classification. The confidence index depends on the model : - LibSVM : difference between the two highest probabilities (needs a model with probability estimates, so that classes probabilities can be computed for each sample) - OpenCV * Boost : sum of votes * DecisionTree : (not supported) * GradientBoostedTree : (not supported) * KNearestNeighbors : number of neighbors with the same label * NeuralNetwork : difference between the two highest responses * NormalBayes : (not supported) * RandomForest : Confidence (proportion of votes for the majority class). Margin (normalized difference of the votes of the 2 majority classes) is not available for now. * SVM : distance to margin (only works for 2-class models)." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
847 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
848 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
849 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
850 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
851 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
852 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
853 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
854 <when value="OTB.ObtainUTMZoneFromGeoPoint">
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
855 <param name="lat" label="lat" optional="false" value="" help="Latitude value of desired point." type="float"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
856 <param name="lon" label="lon" optional="false" value="" help="Longitude value of desired point." type="float"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
857 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
858 <when value="OTB.SOMClassification">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
859 <param name="in" label="in" optional="false" help="Input image to classify." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
860 <param name="out" label="out" optional="false" value="uint8" help="Output classified image (each pixel contains the index of its corresponding vector in the SOM)." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
861 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
862 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
863 <param name="vm" label="vm" optional="false" help="Validity mask (only pixels corresponding to a mask value greater than 0 will be used for learning)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
864 <param name="tp" label="tp" optional="true" value="1" help="Probability for a sample to be selected in the training set" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
865 <param name="ts" label="ts" optional="true" help="Maximum training set size (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
866 <param name="som" label="som" optional="true" value="float" help="Output image containing the Self-Organizing Map" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
867 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
868 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
869 <param name="sx" label="sx" optional="true" value="32" help="X size of the SOM map" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
870 <param name="sy" label="sy" optional="true" value="32" help="Y size of the SOM map" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
871 <param name="nx" label="nx" optional="true" value="10" help="X size of the initial neighborhood in the SOM map" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
872 <param name="ny" label="ny" optional="false" value="10" help="Y size of the initial neighborhood in the SOM map" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
873 <param name="ni" label="ni" optional="true" value="5" help="Number of iterations for SOM learning" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
874 <param name="bi" label="bi" optional="true" value="1" help="Initial learning coefficient" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
875 <param name="bf" label="bf" optional="true" value="0.1" help="Final learning coefficient" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
876 <param name="iv" label="iv" optional="true" value="0" help="Maximum initial neuron weight" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
877 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
878 <param name="rand" label="rand" optional="true" help="Set specific seed. with integer value." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
879 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
880 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
881 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
882 <param type="select" name="som_outformat" label="som_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
883 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
884 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
885 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
886 <when value="OTB.GeneratePlyFile">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
887 <param name="indem" label="indem" optional="false" help="The image should be either a projected DEM or a 3D grid containing 3D point coordinates and a validity mask." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
888 <param name="mode" label="mode" optional="false" value="dem" help="mode" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
889 <option value="dem">dem</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
890 <option value="3dgrid">3dgrid</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
891 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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892 <param name="map" label="map" optional="false" value="utm" help="Defines the map projection to be used." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
893 <option value="utm">utm</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
894 <option value="lambert2">lambert2</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
895 <option value="lambert93">lambert93</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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896 <option value="wgs">wgs</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
897 <option value="epsg">epsg</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
898 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
899 <param name="map_utm_zone" label="map.utm.zone" optional="false" value="31" help="The zone number ranges from 1 to 60 and allows defining the transverse mercator projection (along with the hemisphere)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
900 <param name="map_utm_northhem" label="map.utm.northhem" optional="false" value="False" help="The transverse mercator projections are defined by their zone number as well as the hemisphere. Activate this parameter if your image is in the northern hemisphere." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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901 <param name="map_epsg_code" label="map.epsg.code" optional="false" value="4326" help="See www.spatialreference.org to find which EPSG code is associated to your projection" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
902 <param name="incolor" label="incolor" optional="false" help="If the color image has 4 bands it will be interpreted as Red, Green, Blue, NIR. In other cases, only the first one is used (gray scale colors). The color values are expected in the range 0 - 255, and will be embedded with each 3D point of the PLY file." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
903 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
904 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
905 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
906 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
907 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
908 <when value="OTB.StereoRectificationGridGenerator">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
909 <param name="io_inleft" label="io.inleft" optional="false" help="The left image from the stereo pair, in sensor geometry." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
910 <param name="io_inright" label="io.inright" optional="false" help="The right image from the stereo pair, in sensor geometry." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
911 <param name="io_outleft" label="io.outleft" optional="false" value="float" help="The deformation grid to resample the left image from sensor geometry to epipolar geometry." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
912 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
913 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
914 <param name="io_outright" label="io.outright" optional="false" value="float" help="The deformation grid to resample the right image from sensor geometry to epipolar geometry." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
915 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
916 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
917 <param name="epi_elevation_dem" label="epi.elevation.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
918 <param name="epi_elevation_geoid" label="epi.elevation.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
919 <param name="epi_elevation_default" label="epi.elevation.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
920 <param name="epi_elevation_avgdem_step" label="epi.elevation.avgdem.step" optional="true" value="1" help="Step of sub-sampling for average elevation estimation" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
921 <param name="epi_scale" label="epi.scale" optional="false" value="1" help="The scale parameter allows generating zoomed-in (scale &amp;lt; 1) or zoomed-out (scale &gt; 1) epipolar images." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
922 <param name="epi_step" label="epi.step" optional="false" value="1" help="Stereo-rectification deformation grid only varies slowly. Therefore, it is recommended to use a coarser grid (higher step value) in case of large images" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
923 <param name="inverse_outleft" label="inverse.outleft" optional="true" value="float" help="The deformation grid to resample the left image from the epipolar geometry back into its original sensor geometry." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
924 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
925 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
926 <param name="inverse_outright" label="inverse.outright" optional="true" value="float" help="The output deformation grid to resample the right image from the epipolar geometry back into its original sensor geometry." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
927 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
928 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
929 <param name="inverse_ssrate" label="inverse.ssrate" optional="false" value="16" help="Grid inversion is an heavy process that implies spline regression on control points. To avoid eating to much memory, this parameter allows one to first sub-sample the field to invert." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
930 <param type="select" name="io_outleft_outformat" label="io.outleft_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
931 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
932 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
933 <param type="select" name="io_outright_outformat" label="io.outright_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
934 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
935 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
936 <param type="select" name="inverse_outleft_outformat" label="inverse.outleft_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
937 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
938 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
939 <param type="select" name="inverse_outright_outformat" label="inverse.outright_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
940 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
941 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
942 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
943 <when value="OTB.SARDeburst">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
944 <param name="in" label="in" optional="false" help="Raw Sentinel1 IW SLC image, or any extract of such made by OTB (geom file needed)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
945 <param name="out" label="out" optional="false" value="float" help="Deburst image, with updated geom file that can be further used by Orthorectification application. If the input image is a raw Sentinel1 product, uint16 output type should be used (encoding of S1 product). Otherwise, output type should match type of input image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
946 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
947 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
948 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
949 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
950 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
951 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
952 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
953 <when value="OTB.SampleExtraction">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
954 <param name="in" label="in" optional="false" help="Support image" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
955 <param name="vec" label="vec" optional="false" help="Vector data file containing samplingpositions. (OGR format)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
956 <param name="outfield" label="outfield" optional="false" value="prefix" help="Choice between naming method for output fields" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
957 <option value="prefix">prefix</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
958 <option value="list">list</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
959 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
960 <param name="outfield_prefix_name" label="outfield.prefix.name" optional="false" value="value_" help="Prefix used to form the field names thatwill contain the extracted values." type="text"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
961 <param name="outfield_list_names" label="outfield.list.names" optional="false" value="" help="Full list of output field names." type="text"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
962 <param name="field" label="field" optional="false" value="" help="Name of the field carrying the class name in the input vectors." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
963 <param name="layer" label="layer" optional="true" value="0" help="Layer index to read in the input vector file." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
964 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
965 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
966 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
967 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
968 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
969 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
970 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
971 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
972 <when value="OTB.MorphologicalProfilesAnalysis">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
973 <param name="in" label="in" optional="false" help="The input image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
974 <param name="out" label="out" optional="false" value="float" help="The output image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
975 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
976 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
977 <param name="channel" label="channel" optional="false" value="1" help="The selected channel index for input image" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
978 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
979 <param name="structype" label="structype" optional="false" value="ball" help="Choice of the structuring element type" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
980 <option value="ball">ball</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
981 <option value="cross">cross</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
982 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
983 <param name="size" label="size" optional="false" value="5" help="Size of the profiles" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
984 <param name="radius" label="radius" optional="false" value="5" help="Initial radius of the structuring element (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
985 <param name="step" label="step" optional="false" value="1" help="Radius step along the profile (in pixels)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
986 <param name="profile" label="profile" optional="false" value="opening" help="profile" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
987 <option value="opening">opening</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
988 <option value="closing">closing</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
989 <option value="derivativeopening">derivativeopening</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
990 <option value="derivativeclosing">derivativeclosing</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
991 <option value="openingcharacteristics">openingcharacteristics</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
992 <option value="closingcharacteristics">closingcharacteristics</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
993 <option value="classification">classification</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
994 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
995 <param name="profile_classification_sigma" label="profile.classification.sigma" optional="false" value="1" help="Sigma value for leveling tolerance" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
996 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
997 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
998 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
999 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1000 <when value="OTB.MeanShiftSmoothing">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1001 <param name="in" label="in" optional="false" help="The input image can be any single or multiband image. Beware of pontential imbalance between bands ranges as it may alter euclidean distance." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1002 <param name="fout" label="fout" optional="false" value="float" help="This output image contains the final average spectral signatures of each pixel. The output type should be at least as wide as the input image type. Floating point encoding is advised. This output can be used as input image (in) of the LSMSSegmentation application [4,5]." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1003 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1004 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1005 <param name="foutpos" label="foutpos" optional="true" value="float" help="This output image contains the 2D displacement between the input pixel spatial position and the final position after convergence. Floating point encoding is mandatory. This output can be used as input image (in) of the LSMSSegmentation application [4,5]." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1006 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1007 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1008 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1009 <param name="spatialr" label="spatialr" optional="true" value="5" help="Radius of the spatial neighborhood for averaging. Higher values will result in more smoothing and higher processing time." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1010 <param name="ranger" label="ranger" optional="true" value="15" help="Threshold on spectral signature euclidean distance (expressed in radiometry unit) to consider neighborhood pixel for averaging. Higher values will be less edge-preserving (more similar to simple average in neighborhood), whereas lower values will result in less noise smoothing. Note that this parameter has no effect on processing time." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1011 <param name="thres" label="thres" optional="true" value="0.1" help="Algorithm will stop if update of average spectral signature and spatial position is below this threshold." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1012 <param name="maxiter" label="maxiter" optional="true" value="100" help="Algorithm will stop if convergence threshold is not met after the maximum number of iterations." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1013 <param name="rangeramp" label="rangeramp" optional="true" value="0" help="Vary the range radius linearly with the central pixel intensity (experimental)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1014 <param name="modesearch" label="modesearch" optional="false" value="False" help="If activated pixel iterative convergence is stopped if the path crosses an already converged pixel. Be careful, with this option, the result will slightly depend on thread number and the results will not be stable (see [4] for more details)." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1015 <param type="select" name="fout_outformat" label="fout_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1016 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1017 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1018 <param type="select" name="foutpos_outformat" label="foutpos_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1019 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1020 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1021 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1022 <when value="OTB.BundleToPerfectSensor">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1023 <param name="inp" label="inp" optional="false" help="Input panchromatic image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1024 <param name="inxs" label="inxs" optional="false" help="Input XS image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1025 <param name="out" label="out" optional="false" value="float" help="Output image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1026 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1027 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1028 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1029 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1030 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1031 <param name="mode" label="mode" optional="false" value="default" help="Superimposition mode" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1032 <option value="default">default</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1033 <option value="phr">phr</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1034 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1035 <param name="method" label="method" optional="false" value="rcs" help="Selection of the pan-sharpening method." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1036 <option value="rcs">rcs</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1037 <option value="lmvm">lmvm</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1038 <option value="bayes">bayes</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1039 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1040 <param name="method_lmvm_radiusx" label="method.lmvm.radiusx" optional="false" value="3" help="Set the x radius of the sliding window." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1041 <param name="method_lmvm_radiusy" label="method.lmvm.radiusy" optional="false" value="3" help="Set the y radius of the sliding window." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1042 <param name="method_bayes_lambda" label="method.bayes.lambda" optional="false" value="0.9999" help="Set the weighting value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1043 <param name="method_bayes_s" label="method.bayes.s" optional="false" value="1" help="Set the S coefficient." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1044 <param name="lms" label="lms" optional="true" value="4" help="Spacing of the deformation field. Default is 10 times the PAN image spacing." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1045 <param name="interpolator" label="interpolator" optional="false" value="bco" help="This group of parameters allows defining how the input image will be interpolated during resampling." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
1046 <option value="bco">bco</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
1047 <option value="nn">nn</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1048 <option value="linear">linear</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1049 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1050 <param name="interpolator_bco_radius" label="interpolator.bco.radius" optional="true" value="0" help="Fill value for area outside the reprojected image" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1051 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1052 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1053 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1054 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1055 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1056 <when value="OTB.ConvertCartoToGeoPoint">
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1057 <param name="carto_x" label="carto.x" optional="false" value="" help="X cartographic coordinates in the projection defined by mapproj parameter" type="float"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1058 <param name="carto_y" label="carto.y" optional="false" value="" help="Y cartographic coordinates in the projection defined by mapproj parameter" type="float"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1059 <param name="mapproj" label="mapproj" optional="false" value="utm" help="Defines the map projection to be used." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1060 <option value="utm">utm</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1061 <option value="lambert2">lambert2</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1062 <option value="lambert93">lambert93</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1063 <option value="wgs">wgs</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1064 <option value="epsg">epsg</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1065 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1066 <param name="mapproj_utm_zone" label="mapproj.utm.zone" optional="false" value="31" help="The zone number ranges from 1 to 60 and allows defining the transverse mercator projection (along with the hemisphere)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1067 <param name="mapproj_utm_northhem" label="mapproj.utm.northhem" optional="false" value="False" help="The transverse mercator projections are defined by their zone number as well as the hemisphere. Activate this parameter if your image is in the northern hemisphere." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1068 <param name="mapproj_epsg_code" label="mapproj.epsg.code" optional="false" value="4326" help="See www.spatialreference.org to find which EPSG code is associated to your projection" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1069 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1070 <when value="OTB.VectorDataTransform">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1071 <param name="vd" label="vd" optional="false" help="Input vector data file to transform" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1072 <param name="in" label="in" optional="false" help="Image defining the reference coordinate system in which the transform is applied. Both projected and sensor images are supported." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1073 <param name="transform_tx" label="transform.tx" optional="false" value="0" help="Translation in the X direction (in pixels)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1074 <param name="transform_ty" label="transform.ty" optional="false" value="0" help="Translation in the Y direction (in pixels)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1075 <param name="transform_ro" label="transform.ro" optional="false" value="0" help="Angle of the rotation (in degrees)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1076 <param name="transform_centerx" label="transform.centerx" optional="false" value="0" help="X coordinate of the rotation and scaling center (in physical units)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1077 <param name="transform_centery" label="transform.centery" optional="false" value="0" help="Y coordinate of the rotation and scaling center (in physical units)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1078 <param name="transform_scale" label="transform.scale" optional="false" value="1" help="The scale coefficient to apply" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1079 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1080 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1081 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1082 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1083 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1084 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1085 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1086 <when value="OTB.FusionOfClassifications">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1087 <param name="il" label="il" optional="false" help="List of input classification maps to fuse. Labels in each classification image must represent the same class." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1088 <param name="method" label="method" optional="false" value="majorityvoting" help="Selection of the fusion method and its parameters." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1089 <option value="majorityvoting">majorityvoting</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1090 <option value="dempstershafer">dempstershafer</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1091 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1092 <param name="method_dempstershafer_cmfl" label="method.dempstershafer.cmfl" optional="false" value="precision" help="Type of confusion matrix measurement used to compute the masses of belief of each classifier." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1093 <option value="precision">precision</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1094 <option value="recall">recall</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1095 <option value="accuracy">accuracy</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1096 <option value="kappa">kappa</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1097 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1098 <param name="nodatalabel" label="nodatalabel" optional="false" value="0" help="Label for the NoData class. Such input pixels keep their NoData label in the output image and are not handled in the fusion process. By default, 'nodatalabel = 0'." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1099 <param name="undecidedlabel" label="undecidedlabel" optional="false" value="0" help="Label for the Undecided class. Pixels with more than 1 fused class are marked as Undecided. Please note that the Undecided value must be different from existing labels in the input classifications. By default, 'undecidedlabel = 0'." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1100 <param name="out" label="out" optional="false" value="uint8" help="The output classification image resulting from the fusion of the input classification images." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1101 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1102 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1103 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1104 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1105 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1106 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1107 <when value="OTB.VectorDataSetField">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1108 <param name="in" label="in" optional="false" help="Input Vector Data" type="data" format="txt"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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parents: 0
diff changeset
1109 <param name="fn" label="fn" optional="false" value="" help="Field name" type="text"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1110 <param name="fv" label="fv" optional="false" value="" help="Field value" type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1111 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1112 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1113 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1114 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1115 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1116 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1117 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1118 <when value="OTB.Pansharpening">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1119 <param name="inp" label="inp" optional="false" help="Input panchromatic image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1120 <param name="inxs" label="inxs" optional="false" help="Input XS image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1121 <param name="out" label="out" optional="false" value="float" help="Output image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1122 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1123 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1124 <param name="method" label="method" optional="false" value="rcs" help="Selection of the pan-sharpening method." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1125 <option value="rcs">rcs</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1126 <option value="lmvm">lmvm</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1127 <option value="bayes">bayes</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1128 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1129 <param name="method_lmvm_radiusx" label="method.lmvm.radiusx" optional="false" value="3" help="Set the x radius of the sliding window." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1130 <param name="method_lmvm_radiusy" label="method.lmvm.radiusy" optional="false" value="3" help="Set the y radius of the sliding window." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1131 <param name="method_bayes_lambda" label="method.bayes.lambda" optional="false" value="0.9999" help="Set the weighting value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1132 <param name="method_bayes_s" label="method.bayes.s" optional="false" value="1" help="Set the S coefficient." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1133 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1134 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1135 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1136 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1137 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1138 <when value="OTB.ConcatenateVectorData">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1139 <param name="vd" label="vd" optional="false" help="Vector data files to be concatenated." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1140 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1141 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1142 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1143 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1144 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1145 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1146 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1147 <when value="OTB.GridBasedImageResampling">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1148 <param name="io_in" label="io.in" optional="false" help="The input image to resample" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1149 <param name="io_out" label="io.out" optional="false" value="float" help="The resampled output image" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1150 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1151 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1152 <param name="grid_in" label="grid.in" optional="false" help="The resampling grid" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1153 <param name="grid_type" label="grid.type" optional="false" value="def" help="allows one to choose between two grid types" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1154 <option value="def">def</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1155 <option value="loc">loc</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1156 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1157 <param name="out_ulx" label="out.ulx" optional="false" value="0" help="X Coordinate of the upper-left pixel of the output resampled image" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1158 <param name="out_uly" label="out.uly" optional="false" value="0" help="Y Coordinate of the upper-left pixel of the output resampled image" type="float"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1159 <param name="out_sizex" label="out.sizex" optional="false" value="" help="Size of the output resampled image along X (in pixels)" type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1160 <param name="out_sizey" label="out.sizey" optional="false" value="" help="Size of the output resampled image along Y (in pixels)" type="integer"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1161 <param name="out_spacingx" label="out.spacingx" optional="false" value="1" help="Size of each pixel along X axis" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1162 <param name="out_spacingy" label="out.spacingy" optional="false" value="1" help="Size of each pixel along Y axis" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1163 <param name="out_default" label="out.default" optional="false" value="0" help="The default value to give to pixel that falls outside of the input image." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1164 <param name="interpolator" label="interpolator" optional="false" value="bco" help="This group of parameters allows one to define how the input image will be interpolated during resampling." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1165 <option value="nn">nn</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1166 <option value="linear">linear</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1167 <option value="bco">bco</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1168 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1169 <param name="interpolator_bco_radius" label="interpolator.bco.radius" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1170 <param type="select" name="io_out_outformat" label="io.out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1171 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1172 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1173 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1174 <when value="OTB.SARPolarSynth">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1175 <param name="in" label="in" optional="false" help="Input image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1176 <param name="out" label="out" optional="false" value="float" help="Output image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1177 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1178 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1179 <param name="psii" label="psii" optional="false" value="0" help="Orientation (transmitting antenna)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1180 <param name="khii" label="khii" optional="false" value="0" help="Ellipticity (transmitting antenna)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1181 <param name="psir" label="psir" optional="false" value="0" help="Orientation (receiving antenna)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1182 <param name="khir" label="khir" optional="false" value="0" help="Ellipticity (receiving antenna)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1183 <param name="emissionh" label="emissionh" optional="true" value="0" help="This parameter is useful in determining the polarization architecture (dual polarization case)." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1184 <param name="emissionv" label="emissionv" optional="true" value="0" help="This parameter is useful in determining the polarization architecture (dual polarization case)." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1185 <param name="mode" label="mode" optional="false" value="none" help="mode" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1186 <option value="none">none</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1187 <option value="co">co</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1188 <option value="cross">cross</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1189 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1190 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1191 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1192 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1193 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1194 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1195 <when value="OTB.GrayScaleMorphologicalOperation">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1196 <param name="in" label="in" optional="false" help="The input image to be filtered." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1197 <param name="out" label="out" optional="false" value="float" help="Output image containing the filtered output image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1198 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1199 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1200 <param name="channel" label="channel" optional="false" value="1" help="The selected channel index" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1201 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1202 <param name="structype" label="structype" optional="false" value="ball" help="Choice of the structuring element type" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1203 <option value="ball">ball</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1204 <option value="cross">cross</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1205 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1206 <param name="structype_ball_xradius" label="structype.ball.xradius" optional="false" value="5" help="The Structuring Element X Radius" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1207 <param name="structype_ball_yradius" label="structype.ball.yradius" optional="false" value="5" help="The Structuring Element Y Radius" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1208 <param name="filter" label="filter" optional="false" value="dilate" help="Choice of the morphological operation" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1209 <option value="dilate">dilate</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1210 <option value="erode">erode</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1211 <option value="opening">opening</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1212 <option value="closing">closing</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1213 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1214 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1215 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1216 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1217 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1218 <when value="OTB.ReadImageInfo">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1219 <param name="in" label="in" optional="false" help="Input image to analyse" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1220 <param name="keywordlist" label="keywordlist" optional="false" value="False" help="Output the OSSIM keyword list. It contains metadata information (sensor model, geometry ). Information is stored in keyword list (pairs of key/value)" type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1221 <param type="select" name="outkwl_outformat" label="outkwl_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1222 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1223 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1224 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1225 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1226 <when value="OTB.ImageEnvelope">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1227 <param name="in" label="in" optional="false" help="Input image filename." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1228 <param name="sr" label="sr" optional="true" value="0" help="Sampling rate for image edges (in pixel)." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1229 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1230 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1231 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1232 <param name="proj" label="proj" optional="true" help="Projection to be used to compute the envelope (default is WGS84)" type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1233 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1234 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1235 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1236 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1237 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1238 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1239 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1240 <when value="OTB.LSMSVectorization">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1241 <param name="in" label="in" optional="false" help="The input image, containing initial spectral signatures corresponding to the segmented image (inseg)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1242 <param name="inseg" label="inseg" optional="false" help="Segmented image where each pixel value is the unique integer label of the segment it belongs to." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1243 <param name="tilesizex" label="tilesizex" optional="false" value="500" help="Size of tiles along the X-axis for tile-wise processing." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1244 <param name="tilesizey" label="tilesizey" optional="false" value="500" help="Size of tiles along the Y-axis for tile-wise processing." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1245 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1246 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1247 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1248 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1249 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1250 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1251 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1252 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1253 <when value="OTB.FineRegistration">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1254 <param name="ref" label="ref" optional="false" help="The reference image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1255 <param name="sec" label="sec" optional="false" help="The secondary image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1256 <param name="out" label="out" optional="false" value="float" help="The output image contains 3 bands, for X offset, Y offset and the metric value. It may contain a 4th one with the validity mask (if used)." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1257 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1258 </param>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1259 <param name="erx" label="erx" optional="false" value="" help="The exploration radius along x (in pixels)" type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1260 <param name="ery" label="ery" optional="false" value="" help="The exploration radius along y (in pixels)" type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1261 <param name="mrx" label="mrx" optional="false" value="" help="Radius along x (in pixels) of the metric computation window" type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1262 <param name="mry" label="mry" optional="false" value="" help="Radius along y (in pixels) of the metric computation window" type="integer"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1263 <param name="w" label="w" optional="false" help="The image to warp after disparity estimation is completed." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1264 <param name="wo" label="wo" optional="true" value="float" help="The output warped image" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1265 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1266 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1267 <param name="cox" label="cox" optional="true" value="0" help="Coarse offset along x (in physical space) between the two images, used as an initial offset for all pixels." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1268 <param name="coy" label="coy" optional="true" value="0" help="Coarse offset along y (in physical space) between the two images, used as an initial offset for all pixels." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1269 <param name="ssrx" label="ssrx" optional="true" value="1" help="Generates a result at a coarser resolution with a given sub-sampling rate along X" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1270 <param name="ssry" label="ssry" optional="true" value="1" help="Generates a result at a coarser resolution with a given sub-sampling rate along Y" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1271 <param name="rgsx" label="rgsx" optional="true" help="Performs a gaussian smoothing of the reference image. Parameter is gaussian sigma (in pixels) in X direction." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1272 <param name="rgsy" label="rgsy" optional="true" help="Performs a gaussian smoothing of the reference image. Parameter is gaussian sigma (in pixels) in Y direction." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1273 <param name="sgsx" label="sgsx" optional="true" help="Performs a gaussian smoothing of the secondary image. Parameter is gaussian sigma (in pixels) in X direction." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1274 <param name="sgsy" label="sgsy" optional="true" help="Performs a gaussian smoothing of the secondary image. Parameter is gaussian sigma (in pixels) in Y direction." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1275 <param name="m" label="m" optional="true" help="Choose the metric used for block matching. Available metrics are cross-correlation (CC), cross-correlation with subtracted mean (CCSM), mean-square difference (MSD), mean reciprocal square difference (MRSD) and mutual information (MI). Default is cross-correlation" type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1276 <param name="spa" label="spa" optional="true" value="0.01" help="Metric extrema location will be refined up to the given accuracy. Default is 0.01" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1277 <param name="cva" label="cva" optional="true" value="0.01" help="Metric extrema will be refined up to the given accuracy. Default is 0.01" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1278 <param name="vmlt" label="vmlt" optional="true" help="Lower threshold to compute the validity mask. This mask will be the 4th output band." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1279 <param name="vmut" label="vmut" optional="true" help="Upper threshold to obtain a validity mask. This mask will be the 4th output band." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1280 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1281 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1282 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1283 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1284 <param type="select" name="wo_outformat" label="wo_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1285 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1286 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1287 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1288 <when value="OTB.GenerateRPCSensorModel">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1289 <param name="inpoints" label="inpoints" optional="false" help="Input file containing tie points. Points are stored in following format: col row lon lat. Spaced by a space or tab character. Line beginning with # are ignored." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1290 <param name="map" label="map" optional="false" value="utm" help="Defines the map projection to be used." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1291 <option value="utm">utm</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1292 <option value="lambert2">lambert2</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1293 <option value="lambert93">lambert93</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1294 <option value="wgs">wgs</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1295 <option value="epsg">epsg</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1296 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1297 <param name="map_utm_zone" label="map.utm.zone" optional="false" value="31" help="The zone number ranges from 1 to 60 and allows defining the transverse mercator projection (along with the hemisphere)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1298 <param name="map_utm_northhem" label="map.utm.northhem" optional="false" value="False" help="The transverse mercator projections are defined by their zone number as well as the hemisphere. Activate this parameter if your image is in the northern hemisphere." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1299 <param name="map_epsg_code" label="map.epsg.code" optional="false" value="4326" help="See www.spatialreference.org to find which EPSG code is associated to your projection" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1300 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1301 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1302 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1303 <param type="select" name="outgeom_outformat" label="outgeom_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1304 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1305 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1306 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1307 <param type="select" name="outstat_outformat" label="outstat_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1308 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1309 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1310 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1311 <param type="select" name="outvector_outformat" label="outvector_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1312 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1313 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1314 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1315 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1316 <when value="OTB.DomainTransform">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1317 <param name="in" label="in" optional="false" help="This will take an input image to be transformed image. For FFT inverse transform, it expects a complex image as two-band image in which first band represent real part and second band represent imaginary part." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1318 <param name="out" label="out" optional="false" value="float" help="This parameter holds the output file name to which transformed image will be written. This has a slightly different behaviour depending on transform type. For Wavelet, output is a single band image for both forward and inverse transform. For FFT forward transform, output is two band image where first band represents real part and second band represents imaginary part of a complex image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1319 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1320 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1321 <param name="mode" label="mode" optional="false" value="wavelet" help="This parameter allows one to select between fft(fourier) and wavelet" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1322 <option value="fft">fft</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1323 <option value="wavelet">wavelet</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1324 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1325 <param name="mode_fft_shift" label="mode.fft.shift" optional="false" value="False" help="Shift transform of fft filter" type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1326 <param name="mode_wavelet_form" label="mode.wavelet.form" optional="false" value="haar" help="mode.wavelet.form" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1327 <option value="haar">haar</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1328 <option value="db4">db4</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1329 <option value="db6">db6</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1330 <option value="db8">db8</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1331 <option value="db12">db12</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1332 <option value="db20">db20</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1333 <option value="sb24">sb24</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1334 <option value="sb44">sb44</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1335 <option value="sym8">sym8</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1336 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1337 <param name="mode_wavelet_nlevels" label="mode.wavelet.nlevels" optional="false" value="2" help="Number of decomposition levels" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1338 <param name="direction" label="direction" optional="false" value="forward" help="direction" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1339 <option value="forward">forward</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1340 <option value="inverse">inverse</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1341 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1342 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1343 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1344 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1345 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1346 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1347 <when value="OTB.RefineSensorModel">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1348 <param name="ingeom" label="ingeom" optional="false" help="Geom file containing the sensor model to refine" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1349 <param name="inpoints" label="inpoints" optional="false" help="Input file containing tie points. Points are stored in following format: row col lon lat. Line beginning with # are ignored." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1350 <param name="map" label="map" optional="false" value="utm" help="Defines the map projection to be used." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1351 <option value="utm">utm</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1352 <option value="lambert2">lambert2</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1353 <option value="lambert93">lambert93</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1354 <option value="wgs">wgs</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1355 <option value="epsg">epsg</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1356 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1357 <param name="map_utm_zone" label="map.utm.zone" optional="false" value="31" help="The zone number ranges from 1 to 60 and allows defining the transverse mercator projection (along with the hemisphere)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1358 <param name="map_utm_northhem" label="map.utm.northhem" optional="false" value="False" help="The transverse mercator projections are defined by their zone number as well as the hemisphere. Activate this parameter if your image is in the northern hemisphere." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1359 <param name="map_epsg_code" label="map.epsg.code" optional="false" value="4326" help="See www.spatialreference.org to find which EPSG code is associated to your projection" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1360 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1361 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1362 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1363 <param type="select" name="outgeom_outformat" label="outgeom_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1364 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1365 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1366 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1367 <param type="select" name="outstat_outformat" label="outstat_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1368 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1369 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1370 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1371 <param type="select" name="outvector_outformat" label="outvector_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1372 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1373 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1374 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1375 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1376 <when value="OTB.ComputeImagesStatistics">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1377 <param name="il" label="il" optional="false" help="List of input image filenames." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1378 <param name="bv" label="bv" optional="true" help="Background value to ignore in computation of statistics." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1379 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1380 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1381 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1382 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1383 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1384 <when value="OTB.Rasterization">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1385 <param name="in" label="in" optional="false" help="The input vector dataset to be rasterized" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1386 <param name="out" label="out" optional="false" value="float" help="An output image containing the rasterized vector dataset" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1387 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1388 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1389 <param name="im" label="im" optional="false" help="A reference image from which to import output grid and projection reference system information." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1390 <param name="szx" label="szx" optional="true" help="Output size along x axis (useless if support image is given)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1391 <param name="szy" label="szy" optional="true" help="Output size along y axis (useless if support image is given)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1392 <param name="epsg" label="epsg" optional="true" help="EPSG code for the output projection reference system (EPSG 4326 for WGS84, 32631 for UTM31N...,useless if support image is given)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1393 <param name="orx" label="orx" optional="true" help="Output upper-left corner x coordinate (useless if support image is given)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1394 <param name="ory" label="ory" optional="true" help="Output upper-left corner y coordinate (useless if support image is given)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1395 <param name="spx" label="spx" optional="true" help="Spacing (ground sampling distance) along x axis (useless if support image is given)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1396 <param name="spy" label="spy" optional="true" help="Spacing (ground sampling distance) along y axis (useless if support image is given)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1397 <param name="background" label="background" optional="false" value="0" help="Default value for pixels not belonging to any geometry" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1398 <param name="mode" label="mode" optional="false" value="binary" help="Choice of rasterization modes" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1399 <option value="binary">binary</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1400 <option value="attribute">attribute</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1401 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1402 <param name="mode_binary_foreground" label="mode.binary.foreground" optional="false" value="255" help="Value for pixels inside a geometry" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1403 <param name="mode_attribute_field" label="mode.attribute.field" optional="false" value="DN" help="Name of the attribute field to burn" type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1404 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1405 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1406 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1407 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1408 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1409 <when value="OTB.BandMath">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1410 <param name="il" label="il" optional="false" help="Image-list of operands to the mathematical expression." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1411 <param name="out" label="out" optional="false" value="float" help="Output image which is the result of the mathematical expressions on input image-list operands." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1412 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1413 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1414 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1415 <param name="exp" label="exp" optional="false" value="" help="The muParser mathematical expression to apply on input images." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1416 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1417 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1418 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1419 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1420 <when value="OTB.RigidTransformResample">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1421 <param name="in" label="in" optional="false" help="The input image to translate." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1422 <param name="out" label="out" optional="false" value="float" help="The transformed output image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1423 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1424 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1425 <param name="transform_type" label="transform.type" optional="false" value="id" help="Type of transformation. Available transformations are spatial scaling, translation and rotation with scaling factor" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1426 <option value="id">id</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1427 <option value="translation">translation</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1428 <option value="rotation">rotation</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1429 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1430 <param name="transform_type_id_scalex" label="transform.type.id.scalex" optional="false" value="1" help="Scaling factor between the output X spacing and the input X spacing" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1431 <param name="transform_type_id_scaley" label="transform.type.id.scaley" optional="false" value="1" help="Scaling factor between the output Y spacing and the input Y spacing" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1432 <param name="transform_type_translation_tx" label="transform.type.translation.tx" optional="false" value="0" help="The translation value along X axis (in physical units)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1433 <param name="transform_type_translation_ty" label="transform.type.translation.ty" optional="false" value="0" help="The translation value along Y axis (in physical units)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1434 <param name="transform_type_translation_scalex" label="transform.type.translation.scalex" optional="false" value="1" help="Scaling factor between the output X spacing and the input X spacing" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1435 <param name="transform_type_translation_scaley" label="transform.type.translation.scaley" optional="false" value="1" help="Scaling factor between the output Y spacing and the input Y spacing" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1436 <param name="transform_type_rotation_angle" label="transform.type.rotation.angle" optional="false" value="0" help="The rotation angle in degree (values between -180 and 180)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1437 <param name="transform_type_rotation_scalex" label="transform.type.rotation.scalex" optional="false" value="1" help="Scale factor between the X spacing of the rotated output image and the X spacing of the unrotated image" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1438 <param name="transform_type_rotation_scaley" label="transform.type.rotation.scaley" optional="false" value="1" help="Scale factor between the Y spacing of the rotated output image and the Y spacing of the unrotated image" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1439 <param name="interpolator" label="interpolator" optional="false" value="bco" help="This group of parameters allows one to define how the input image will be interpolated during resampling." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1440 <option value="nn">nn</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1441 <option value="linear">linear</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1442 <option value="bco">bco</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1443 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1444 <param name="interpolator_bco_radius" label="interpolator.bco.radius" optional="true" value="128" help="This allows setting the maximum amount of RAM available for processing. As the writing task is time consuming, it is better to write large pieces of data, which can be achieved by increasing this parameter (pay attention to your system capabilities)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1445 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1446 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1447 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1448 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1449 <when value="OTB.SARCalibration">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1450 <param name="in" label="in" optional="false" help="Input complex image" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1451 <param name="out" label="out" optional="false" value="float" help="Output calibrated image. This image contains the backscatter (sigmaNought) of the input image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1452 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1453 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1454 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1455 <param name="noise" label="noise" optional="false" value="False" help="Flag to disable noise. For 5.2.0 release, the noise values are only read by TerraSARX product." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1456 <param name="lut" label="lut" optional="false" value="sigma" help="Lookup table values are not available with all SAR products. Products that provide lookup table with metadata are: Sentinel1, Radarsat2." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1457 <option value="sigma">sigma</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1458 <option value="gamma">gamma</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1459 <option value="beta">beta</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1460 <option value="dn">dn</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1461 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1462 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1463 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1464 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1465 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1466 <when value="OTB.Smoothing">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1467 <param name="in" label="in" optional="false" help="Input image to smooth." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1468 <param name="out" label="out" optional="false" value="float" help="Output smoothed image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1469 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1470 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1471 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1472 <param name="type" label="type" optional="false" value="anidif" help="Smoothing kernel to apply" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1473 <option value="mean">mean</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1474 <option value="gaussian">gaussian</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1475 <option value="anidif">anidif</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1476 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1477 <param name="type_mean_radius" label="type.mean.radius" optional="false" value="2" help="Standard deviation of the gaussian kernel used to filter the image" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1478 <param name="type_anidif_timestep" label="type.anidif.timestep" optional="false" value="0.125" help="Time step that will be used to discretize the diffusion equation" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1479 <param name="type_anidif_nbiter" label="type.anidif.nbiter" optional="false" value="10" help="Number of iterations needed to get the result" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1480 <param name="type_anidif_conductance" label="type.anidif.conductance" optional="false" value="1" help="Controls the sensitivity of the conductance term in the diffusion equation. The lower it is the stronger the features will be preserved" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1481 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1482 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1483 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1484 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1485 <when value="OTB.TileFusion">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1486 <param name="il" label="il" optional="false" help="Input images to concatenate (in lexicographic order, for instance : (0,0) (1,0) (0,1) (1,1))." type="data" format="txt"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1487 <param name="cols" label="cols" optional="false" value="" help="Number of columns in the tile array" type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1488 <param name="rows" label="rows" optional="false" value="" help="Number of rows in the tile array" type="integer"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1489 <param name="out" label="out" optional="false" value="float" help="Output entire image" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1490 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1491 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1492 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1493 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1494 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1495 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1496 <when value="OTB.ColorMapping">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1497 <param name="in" label="in" optional="false" help="Input image filename" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1498 <param name="out" label="out" optional="false" value="uint8" help="Output image filename" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1499 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1500 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1501 <param name="op" label="op" optional="false" value="labeltocolor" help="Selection of the operation to execute (default is : label to color)." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1502 <option value="labeltocolor">labeltocolor</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1503 <option value="colortolabel">colortolabel</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1504 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1505 <param name="op_colortolabel_notfound" label="op.colortolabel.notfound" optional="true" value="404" help="Label to use for unknown colors." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1506 <param name="method" label="method" optional="false" value="custom" help="Selection of color mapping methods and their parameters." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1507 <option value="custom">custom</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1508 <option value="continuous">continuous</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1509 <option value="optimal">optimal</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1510 <option value="image">image</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1511 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1512 <param name="method_custom_lut" label="method.custom.lut" optional="false" help="An ASCII file containing the look-up tablewith one color per line(for instance the line '1 255 0 0' means that all pixels with label 1 will be replaced by RGB color 255 0 0)Lines beginning with a # are ignored" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1513 <param name="method_continuous_lut" label="method.continuous.lut" optional="false" value="red" help="Available look-up tables." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1514 <option value="red">red</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1515 <option value="green">green</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1516 <option value="blue">blue</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1517 <option value="grey">grey</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1518 <option value="hot">hot</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1519 <option value="cool">cool</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1520 <option value="spring">spring</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1521 <option value="summer">summer</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1522 <option value="autumn">autumn</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1523 <option value="winter">winter</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1524 <option value="copper">copper</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1525 <option value="jet">jet</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1526 <option value="hsv">hsv</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1527 <option value="overunder">overunder</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1528 <option value="relief">relief</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1529 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1530 <param name="method_continuous_min" label="method.continuous.min" optional="false" value="0" help="Set the lower input value of the mapping range." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1531 <param name="method_continuous_max" label="method.continuous.max" optional="false" value="255" help="Set the higher input value of the mapping range." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1532 <param name="method_optimal_background" label="method.optimal.background" optional="false" value="0" help="Value of the background label" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1533 <param name="method_image_in" label="method.image.in" optional="false" help="Support image filename. For each label, the LUT is calculated from the mean pixel value in the support image, over the corresponding labeled areas. First of all, the support image is normalized with extrema rejection" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1534 <param name="method_image_nodatavalue" label="method.image.nodatavalue" optional="true" value="0" help="NoData value for each channel of the support image, which will not be handled in the LUT estimation. If NOT checked, ALL the pixel values of the support image will be handled in the LUT estimation." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1535 <param name="method_image_low" label="method.image.low" optional="true" value="2" help="lower quantile for image normalization" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1536 <param name="method_image_up" label="method.image.up" optional="true" value="2" help="upper quantile for image normalization" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1537 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1538 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1539 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1540 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1541 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1542 <when value="OTB.Superimpose">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1543 <param name="inr" label="inr" optional="false" help="The input reference image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1544 <param name="inm" label="inm" optional="false" help="The image to reproject into the geometry of the reference input." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1545 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1546 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1547 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1548 <param name="lms" label="lms" optional="true" value="4" help="Generate a coarser deformation field with the given spacing" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1549 <param name="fv" label="fv" optional="true" value="0" help="Fill value for area outside the reprojected image" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1550 <param name="out" label="out" optional="false" value="float" help="Output reprojected image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1551 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1552 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1553 <param name="mode" label="mode" optional="false" value="default" help="Superimposition mode" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1554 <option value="default">default</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1555 <option value="phr">phr</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1556 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1557 <param name="interpolator" label="interpolator" optional="false" value="bco" help="This group of parameters allows defining how the input image will be interpolated during resampling." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1558 <option value="bco">bco</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1559 <option value="nn">nn</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1560 <option value="linear">linear</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1561 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1562 <param name="interpolator_bco_radius" label="interpolator.bco.radius" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1563 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1564 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1565 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1566 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1567 <when value="OTB.ClassificationMapRegularization">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1568 <param name="io_in" label="io.in" optional="false" help="The input labeled image to regularize." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1569 <param name="io_out" label="io.out" optional="false" value="uint8" help="The output regularized labeled image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1570 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1571 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1572 <param name="ip_radius" label="ip.radius" optional="false" value="1" help="The radius of the ball shaped structuring element (expressed in pixels). By default, 'ip.radius = 1 pixel'." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1573 <param name="ip_suvbool" label="ip.suvbool" optional="false" value="False" help="Pixels with more than 1 majority class are marked as Undecided if this parameter is checked (true), or keep their Original labels otherwise (false). Please note that the Undecided value must be different from existing labels in the input labeled image. By default, 'ip.suvbool = false'." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1574 <param name="ip_nodatalabel" label="ip.nodatalabel" optional="false" value="0" help="Label for the NoData class. Such input pixels keep their NoData label in the output image. By default, 'ip.nodatalabel = 0'." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1575 <param name="ip_undecidedlabel" label="ip.undecidedlabel" optional="false" value="0" help="Label for the Undecided class. By default, 'ip.undecidedlabel = 0'." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1576 <param name="ip_onlyisolatedpixels" label="ip.onlyisolatedpixels" optional="false" value="False" help="Only pixels whose label is unique in the neighbordhood will be processed. By default, 'ip.onlyisolatedpixels = false'." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1577 <param name="ip_isolatedthreshold" label="ip.isolatedthreshold" optional="false" value="1" help="Maximum number of neighbours with the same label as the center pixel to consider that it is an isolated pixel. By default, 'ip.isolatedthreshold = 1'." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1578 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1579 <param type="select" name="io_out_outformat" label="io.out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1580 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1581 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1582 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1583 <when value="OTB.DynamicConvert">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1584 <param name="in" label="in" optional="false" help="Input image" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1585 <param name="out" label="out" optional="false" value="uint8" help="Output image" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1586 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1587 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1588 <param name="type" label="type" optional="false" value="linear" help="Transfer function for the rescaling" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1589 <option value="linear">linear</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1590 <option value="log2">log2</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1591 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1592 <param name="type_linear_gamma" label="type.linear.gamma" optional="true" value="1" help="Gamma correction factor" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1593 <param name="mask" label="mask" optional="false" help="Optional mask to indicate which pixels are valid for computing the histogram quantiles. Pixels where the mask is zero will not contribute to the histogram. The mask must have the same dimensions as the input image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1594 <param name="quantile_high" label="quantile.high" optional="true" value="2" help="Quantiles to cut from histogram high values before computing min/max rescaling (in percent, 2 by default)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1595 <param name="quantile_low" label="quantile.low" optional="true" value="2" help="Quantiles to cut from histogram low values before computing min/max rescaling (in percent, 2 by default)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1596 <param name="channels" label="channels" optional="false" value="all" help="It's possible to select the channels of the output image. There are 3 modes, the available choices are:" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1597 <option value="all">all</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1598 <option value="grayscale">grayscale</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1599 <option value="rgb">rgb</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1600 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1601 <param name="channels_grayscale_channel" label="channels.grayscale.channel" optional="false" value="1" help="channels.grayscale.channel" type="integer"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1602 <param name="channels_rgb_red" label="channels.rgb.red" optional="false" value="" help="Red channel index." type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1603 <param name="channels_rgb_green" label="channels.rgb.green" optional="false" value="" help="Green channel index." type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1604 <param name="channels_rgb_blue" label="channels.rgb.blue" optional="false" value="" help="Blue channel index." type="integer"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1605 <param name="outmin" label="outmin" optional="true" value="0" help="Minimum value of the output image." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1606 <param name="outmax" label="outmax" optional="true" value="255" help="Maximum value of the output image." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1607 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1608 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1609 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1610 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1611 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1612 <when value="OTB.Rescale">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1613 <param name="in" label="in" optional="false" help="The image to scale." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1614 <param name="out" label="out" optional="false" value="float" help="The rescaled image filename." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1615 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1616 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1617 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1618 <param name="outmin" label="outmin" optional="true" value="0" help="Minimum value of the output image." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1619 <param name="outmax" label="outmax" optional="true" value="255" help="Maximum value of the output image." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1620 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1621 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1622 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1623 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1624 <when value="OTB.Quicklook">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1625 <param name="in" label="in" optional="false" help="The image to read" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1626 <param name="out" label="out" optional="false" value="float" help="The subsampled image" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1627 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1628 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1629 <param name="cl" label="cl" optional="true" help="Selected channels" type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1630 <param name="rox" label="rox" optional="true" value="0" help="first point of ROI in x-direction" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1631 <param name="roy" label="roy" optional="true" value="0" help="first point of ROI in y-direction" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1632 <param name="rsx" label="rsx" optional="true" value="0" help="size of ROI in x-direction" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1633 <param name="rsy" label="rsy" optional="true" value="0" help="size of ROI in y-direction" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1634 <param name="sr" label="sr" optional="true" value="2" help="Sampling Ratio, default is 2" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1635 <param name="sx" label="sx" optional="true" help="quicklook size in x-direction (used if no sampling ration is given)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1636 <param name="sy" label="sy" optional="true" help="quicklook size in y-direction (used if no sampling ration is given)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1637 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1638 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1639 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1640 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1641 <when value="OTB.RadiometricIndices">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1642 <param name="in" label="in" optional="false" help="Input image" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1643 <param name="out" label="out" optional="false" value="float" help="Radiometric indices output image" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1644 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1645 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1646 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1647 <param name="channels_blue" label="channels.blue" optional="false" value="1" help="Blue channel index" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1648 <param name="channels_green" label="channels.green" optional="false" value="1" help="Green channel index" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1649 <param name="channels_red" label="channels.red" optional="false" value="1" help="Red channel index" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1650 <param name="channels_nir" label="channels.nir" optional="false" value="1" help="NIR channel index" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1651 <param name="channels_mir" label="channels.mir" optional="false" value="1" help="Mir channel index" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1652 <param name="list" label="list" optional="false" value="ndvi" help="List of available radiometric indices with their relevant channels in brackets: Vegetation:NDVI - Normalized difference vegetation index (Red, NIR) Vegetation:TNDVI - Transformed normalized difference vegetation index (Red, NIR) Vegetation:RVI - Ratio vegetation index (Red, NIR) Vegetation:SAVI - Soil adjusted vegetation index (Red, NIR) Vegetation:TSAVI - Transformed soil adjusted vegetation index (Red, NIR) Vegetation:MSAVI - Modified soil adjusted vegetation index (Red, NIR) Vegetation:MSAVI2 - Modified soil adjusted vegetation index 2 (Red, NIR) Vegetation:GEMI - Global environment monitoring index (Red, NIR) Vegetation:IPVI - Infrared percentage vegetation index (Red, NIR) Water:NDWI - Normalized difference water index (Gao 1996) (NIR, MIR) Water:NDWI2 - Normalized difference water index (Mc Feeters 1996) (Green, NIR) Water:MNDWI - Modified normalized difference water index (Xu 2006) (Green, MIR) Water:NDPI - Normalized difference pond index (Lacaux et al.) (MIR, Green) Water:NDTI - Normalized difference turbidity index (Lacaux et al.) (Red, Green) Soil:RI - Redness index (Red, Green) Soil:CI - Color index (Red, Green) Soil:BI - Brightness index (Red, Green) Soil:BI2 - Brightness index 2 (NIR, Red, Green)" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1653 <option value="ndvi">ndvi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1654 <option value="tndvi">tndvi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1655 <option value="rvi">rvi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1656 <option value="savi">savi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1657 <option value="tsavi">tsavi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1658 <option value="msavi">msavi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1659 <option value="msavi2">msavi2</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1660 <option value="gemi">gemi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1661 <option value="ipvi">ipvi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1662 <option value="laindvilog">laindvilog</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1663 <option value="lairefl">lairefl</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1664 <option value="laindviformo">laindviformo</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1665 <option value="ndwi">ndwi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1666 <option value="ndwi2">ndwi2</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1667 <option value="mndwi">mndwi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1668 <option value="ndpi">ndpi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1669 <option value="ndti">ndti</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1670 <option value="ri">ri</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1671 <option value="ci">ci</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1672 <option value="bi">bi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1673 <option value="bi2">bi2</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1674 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1675 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1676 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1677 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1678 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1679 <when value="OTB.ExtractROI">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1680 <param name="in" label="in" optional="false" help="Image to be processed." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1681 <param name="out" label="out" optional="false" value="float" help="Region of interest from the input image" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1682 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1683 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1684 <param name="mode" label="mode" optional="false" value="standard" help="mode" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1685 <option value="standard">standard</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1686 <option value="fit">fit</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1687 <option value="extent">extent</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1688 <option value="radius">radius</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1689 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1690 <param name="mode_fit_im" label="mode.fit.im" optional="false" help="Reference image to define the ROI" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1691 <param name="mode_fit_vect" label="mode.fit.vect" optional="false" help="The extent of the input vector file is computed and then gives a region of interest that will be extracted." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1692 <param name="mode_extent_ulx" label="mode.extent.ulx" optional="false" value="0" help="X coordinate of upper left corner point." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1693 <param name="mode_extent_uly" label="mode.extent.uly" optional="false" value="0" help="Y coordinate of upper left corner point." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1694 <param name="mode_extent_lrx" label="mode.extent.lrx" optional="false" value="0" help="X coordinate of lower right corner point." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1695 <param name="mode_extent_lry" label="mode.extent.lry" optional="false" value="0" help="Y coordinate of lower right corner point." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1696 <param name="mode_extent_unit" label="mode.extent.unit" optional="false" value="pxl" help="mode.extent.unit" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1697 <option value="pxl">pxl</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1698 <option value="phy">phy</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1699 <option value="lonlat">lonlat</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1700 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1701 <param name="mode_radius_r" label="mode.radius.r" optional="false" value="0" help="This is the radius parameter of the radius mode." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1702 <param name="mode_radius_unitr" label="mode.radius.unitr" optional="false" value="pxl" help="mode.radius.unitr" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1703 <option value="pxl">pxl</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1704 <option value="phy">phy</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1705 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1706 <param name="mode_radius_cx" label="mode.radius.cx" optional="false" value="0" help="This is the center coordinate of the radius mode, it will be either an ordinate or a latitude." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1707 <param name="mode_radius_cy" label="mode.radius.cy" optional="false" value="0" help="mode.radius.cy" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1708 <param name="mode_radius_unitc" label="mode.radius.unitc" optional="false" value="pxl" help="mode.radius.unitc" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1709 <option value="pxl">pxl</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1710 <option value="phy">phy</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1711 <option value="lonlat">lonlat</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1712 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1713 <param name="startx" label="startx" optional="false" value="0" help="ROI start x position." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1714 <param name="starty" label="starty" optional="false" value="0" help="ROI start y position." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1715 <param name="sizex" label="sizex" optional="false" value="0" help="size along x in pixels." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1716 <param name="sizey" label="sizey" optional="false" value="0" help="size along y in pixels." type="integer"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1717 <param name="cl" label="cl" optional="false" value="" help="Channels to write in the output image." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1718 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1719 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1720 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1721 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1722 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1723 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1724 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1725 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1726 <when value="OTB.PolygonClassStatistics">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1727 <param name="in" label="in" optional="false" help="Support image that will be classified" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1728 <param name="mask" label="mask" optional="false" help="Validity mask (only pixels corresponding to a mask value greater than 0 will be used for statistics)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1729 <param name="vec" label="vec" optional="false" help="Input geometries to analyze" type="data" format="txt"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1730 <param name="field" label="field" optional="false" value="" help="Name of the field carrying the class name in the input vectors." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1731 <param name="layer" label="layer" optional="true" value="0" help="Layer index to read in the input vector file." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1732 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1733 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1734 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1735 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1736 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1737 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1738 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1739 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1740 <when value="OTB.DEMConvert">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1741 <param name="in" label="in" optional="false" help="Input geo-referenced DEM to convert to general raster format." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1742 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1743 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1744 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1745 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1746 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1747 <when value="OTB.MultiResolutionPyramid">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1748 <param name="in" label="in" optional="false" help="in" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1749 <param name="out" label="out" optional="false" value="float" help="will be used to get the prefix and the extension of the images to write" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1750 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1751 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1752 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1753 <param name="level" label="level" optional="false" value="1" help="Number of levels in the pyramid (default is 1)." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1754 <param name="sfactor" label="sfactor" optional="false" value="2" help="Subsampling factor between each level of the pyramid (default is 2)." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1755 <param name="vfactor" label="vfactor" optional="false" value="0.6" help="Variance factor use in smoothing. It is multiplied by the subsampling factor of each level in the pyramid (default is 0.6)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1756 <param name="fast" label="fast" optional="false" value="False" help="If used, this option allows one to speed-up computation by iteratively subsampling previous level of pyramid instead of processing the full input." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1757 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1758 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1759 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1760 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1761 <when value="OTB.LSMSSegmentation">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1762 <param name="in" label="in" optional="false" help="The filtered image, corresponding to the fout output parameter of the MeanShiftSmoothing application." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1763 <param name="inpos" label="inpos" optional="false" help="The filtered position image, corresponding to the foutpos output parameter of the MeanShiftSmoothing application." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1764 <param name="out" label="out" optional="false" value="uint8" help="This output contains the segmented image, where each pixel value is the unique integer label of the segment it belongs to. It is recommended to set the pixel type to uint32." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1765 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1766 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1767 <param name="spatialr" label="spatialr" optional="true" value="5" help="Threshold on Spatial distance to consider pixels in the same segment. A good value is half the spatial radius used in the MeanShiftSmoothing application (spatialr parameter)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1768 <param name="ranger" label="ranger" optional="true" value="15" help="Threshold on spectral signature euclidean distance (expressed in radiometry unit) to consider pixels in the same segment. A good value is half the range radius used in the MeanShiftSmoothing application (ranger parameter)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1769 <param name="minsize" label="minsize" optional="true" value="0" help="Minimum Segment Size. If, after the segmentation, a segment is of size lower than this criterion, the segment is discarded." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1770 <param name="tilesizex" label="tilesizex" optional="false" value="500" help="Size of tiles along the X-axis for tile-wise processing." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1771 <param name="tilesizey" label="tilesizey" optional="false" value="500" help="Size of tiles along the Y-axis for tile-wise processing." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1772 <param name="tmpdir" label="tmpdir" optional="true" help="This applications need to write temporary files for each tile. This parameter allows choosing the path where to write those files. If disabled, the current path will be used." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1773 <param name="cleanup" label="cleanup" optional="false" value="False" help="If activated, the application will try to remove all temporary files it created." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1774 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1775 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1776 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1777 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1778 <when value="OTB.Despeckle">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1779 <param name="in" label="in" optional="false" help="Input image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1780 <param name="out" label="out" optional="false" value="float" help="Output image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1781 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1782 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1783 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1784 <param name="filter" label="filter" optional="false" value="lee" help="filter" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1785 <option value="lee">lee</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1786 <option value="frost">frost</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1787 <option value="gammamap">gammamap</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1788 <option value="kuan">kuan</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1789 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1790 <param name="filter_lee_rad" label="filter.lee.rad" optional="false" value="1" help="Radius in pixel" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1791 <param name="filter_lee_nblooks" label="filter.lee.nblooks" optional="false" value="1" help="Number of looks in the input image." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1792 <param name="filter_frost_rad" label="filter.frost.rad" optional="false" value="1" help="Radius in pixel." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1793 <param name="filter_frost_deramp" label="filter.frost.deramp" optional="false" value="0.1" help="factor use to control theexponential function used to weight effect of the distance between thecentral pixel and its neighborhood. Increasing the deramp parameter willlead to take more into account pixels farther from the center andtherefore increase the smoothing effects." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1794 <param name="filter_gammamap_rad" label="filter.gammamap.rad" optional="false" value="1" help="Radius in pixel." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1795 <param name="filter_gammamap_nblooks" label="filter.gammamap.nblooks" optional="false" value="1" help="Number of looks in the input image." type="float"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1796 <param name="filter_kuan_rad" label="filter.kuan.rad" optional="false" value="" help="Radius in pixel." type="integer"/>
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1797 <param name="filter_kuan_nblooks" label="filter.kuan.nblooks" optional="false" value="" help="Number of looks in the input image." type="float"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1798 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1799 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1800 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1801 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1802 <when value="OTB.TrainVectorClassifier">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1803 <param name="io_vd" label="io.vd" optional="false" help="Input geometries used for training (note : all geometries from the layer will be used)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1804 <param name="io_stats" label="io.stats" optional="false" help="XML file containing mean and variance of each feature." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1805 <param name="layer" label="layer" optional="true" value="0" help="Index of the layer to use in the input vector file." type="integer"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1806 <param name="feat" label="feat" optional="false" value="" help="List of field names in the input vector data to be used as features for training." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1807 <param name="valid_vd" label="valid.vd" optional="false" help="Geometries used for validation (must contain the same fields used for training, all geometries from the layer will be used)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1808 <param name="valid_layer" label="valid.layer" optional="true" value="0" help="Index of the layer to use in the validation vector file." type="integer"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1809 <param name="cfield" label="cfield" optional="false" value="" help="Field containing the class id for supervision. The values in this field shall be cast into integers. Only geometries with this field available will be taken into account." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1810 <param name="v" label="v" optional="false" value="False" help="Verbose mode, display the contingency table result." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1811 <param name="classifier" label="classifier" optional="false" value="libsvm" help="Choice of the classifier to use for the training." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1812 <option value="libsvm">libsvm</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1813 <option value="boost">boost</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1814 <option value="dt">dt</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1815 <option value="ann">ann</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1816 <option value="bayes">bayes</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1817 <option value="rf">rf</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1818 <option value="knn">knn</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1819 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1820 <param name="classifier_libsvm_k" label="classifier.libsvm.k" optional="false" value="linear" help="SVM Kernel Type." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1821 <option value="linear">linear</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1822 <option value="rbf">rbf</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1823 <option value="poly">poly</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1824 <option value="sigmoid">sigmoid</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1825 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1826 <param name="classifier_libsvm_m" label="classifier.libsvm.m" optional="false" value="csvc" help="Type of SVM formulation." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1827 <option value="csvc">csvc</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1828 <option value="nusvc">nusvc</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1829 <option value="oneclass">oneclass</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1830 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1831 <param name="classifier_libsvm_c" label="classifier.libsvm.c" optional="false" value="1" help="SVM models have a cost parameter C (1 by default) to control the trade-off between training errors and forcing rigid margins." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1832 <param name="classifier_libsvm_nu" label="classifier.libsvm.nu" optional="false" value="0.5" help="Cost parameter Nu, in the range 0..1, the larger the value, the smoother the decision." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1833 <param name="classifier_libsvm_opt" label="classifier.libsvm.opt" optional="false" value="False" help="SVM parameters optimization flag." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1834 <param name="classifier_libsvm_prob" label="classifier.libsvm.prob" optional="false" value="False" help="Probability estimation flag." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1835 <param name="classifier_boost_t" label="classifier.boost.t" optional="false" value="real" help="Type of Boosting algorithm." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1836 <option value="discrete">discrete</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1837 <option value="real">real</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1838 <option value="logit">logit</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1839 <option value="gentle">gentle</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1840 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1841 <param name="classifier_boost_w" label="classifier.boost.w" optional="false" value="100" help="The number of weak classifiers." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1842 <param name="classifier_boost_r" label="classifier.boost.r" optional="false" value="0.95" help="A threshold between 0 and 1 used to save computational time. Samples with summary weight &amp;lt;= (1 - weight_trim_rate) do not participate in the next iteration of training. Set this parameter to 0 to turn off this functionality." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1843 <param name="classifier_boost_m" label="classifier.boost.m" optional="false" value="1" help="Maximum depth of the tree." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1844 <param name="classifier_dt_max" label="classifier.dt.max" optional="false" value="10" help="The training algorithm attempts to split each node while its depth is smaller than the maximum possible depth of the tree. The actual depth may be smaller if the other termination criteria are met, and/or if the tree is pruned." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1845 <param name="classifier_dt_min" label="classifier.dt.min" optional="false" value="10" help="If the number of samples in a node is smaller than this parameter, then this node will not be split." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1846 <param name="classifier_dt_ra" label="classifier.dt.ra" optional="false" value="0.01" help="If all absolute differences between an estimated value in a node and the values of the train samples in this node are smaller than this regression accuracy parameter, then the node will not be split further." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1847 <param name="classifier_dt_cat" label="classifier.dt.cat" optional="false" value="10" help="Cluster possible values of a categorical variable into K &amp;lt;= cat clusters to find a suboptimal split." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1848 <param name="classifier_dt_f" label="classifier.dt.f" optional="false" value="0" help="If cv_folds &gt; 1, then it prunes a tree with K-fold cross-validation where K is equal to cv_folds." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1849 <param name="classifier_dt_r" label="classifier.dt.r" optional="false" value="False" help="If true, then a pruning will be harsher. This will make a tree more compact and more resistant to the training data noise but a bit less accurate." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1850 <param name="classifier_dt_t" label="classifier.dt.t" optional="false" value="False" help="If true, then pruned branches are physically removed from the tree." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1851 <param name="classifier_ann_t" label="classifier.ann.t" optional="false" value="reg" help="Type of training method for the multilayer perceptron (MLP) neural network." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1852 <option value="back">back</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1853 <option value="reg">reg</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1854 </param>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
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diff changeset
1855 <param name="classifier_ann_sizes" label="classifier.ann.sizes" optional="false" value="" help="The number of neurons in each intermediate layer (excluding input and output layers)." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1856 <param name="classifier_ann_f" label="classifier.ann.f" optional="false" value="sig" help="This function determine whether the output of the node is positive or not depending on the output of the transfert function." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1857 <option value="ident">ident</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1858 <option value="sig">sig</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1859 <option value="gau">gau</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1860 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1861 <param name="classifier_ann_a" label="classifier.ann.a" optional="false" value="1" help="Alpha parameter of the activation function (used only with sigmoid and gaussian functions)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1862 <param name="classifier_ann_b" label="classifier.ann.b" optional="false" value="1" help="Beta parameter of the activation function (used only with sigmoid and gaussian functions)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
1863 <param name="classifier_ann_bpdw" label="classifier.ann.bpdw" optional="false" value="0.1" help="Strength of the weight gradient term in the BACKPROP method. The recommended value is about 0.1." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1864 <param name="classifier_ann_bpms" label="classifier.ann.bpms" optional="false" value="0.1" help="Strength of the momentum term (the difference between weights on the 2 previous iterations). This parameter provides some inertia to smooth the random fluctuations of the weights. It can vary from 0 (the feature is disabled) to 1 and beyond. The value 0.1 or so is good enough." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1865 <param name="classifier_ann_rdw" label="classifier.ann.rdw" optional="false" value="0.1" help="Initial value Delta_0 of update-values Delta_" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1866 <param name="classifier_ann_rdwm" label="classifier.ann.rdwm" optional="false" value="1e-07" help="Update-values lower limit Delta_" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1867 <param name="classifier_ann_term" label="classifier.ann.term" optional="false" value="all" help="Termination criteria." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1868 <option value="iter">iter</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1869 <option value="eps">eps</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1870 <option value="all">all</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1871 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1872 <param name="classifier_ann_eps" label="classifier.ann.eps" optional="false" value="0.01" help="Epsilon value used in the Termination criteria." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1873 <param name="classifier_ann_iter" label="classifier.ann.iter" optional="false" value="1000" help="Maximum number of iterations used in the Termination criteria." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1874 <param name="classifier_rf_max" label="classifier.rf.max" optional="false" value="5" help="The depth of the tree. A low value will likely underfit and conversely a high value will likely overfit. The optimal value can be obtained using cross validation or other suitable methods." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1875 <param name="classifier_rf_min" label="classifier.rf.min" optional="false" value="10" help="If the number of samples in a node is smaller than this parameter, then the node will not be split. A reasonable value is a small percentage of the total data e.g. 1 percent." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1876 <param name="classifier_rf_ra" label="classifier.rf.ra" optional="false" value="0" help="If all absolute differences between an estimated value in a node and the values of the train samples in this node are smaller than this regression accuracy parameter, then the node will not be split." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1877 <param name="classifier_rf_cat" label="classifier.rf.cat" optional="false" value="10" help="Cluster possible values of a categorical variable into K &amp;lt;= cat clusters to find a suboptimal split." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
1878 <param name="classifier_rf_var" label="classifier.rf.var" optional="false" value="0" help="The size of the subset of features, randomly selected at each tree node, that are used to find the best split(s). If you set it to 0, then the size will be set to the square root of the total number of features." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
1879 <param name="classifier_rf_nbtrees" label="classifier.rf.nbtrees" optional="false" value="100" help="The maximum number of trees in the forest. Typically, the more trees you have, the better the accuracy. However, the improvement in accuracy generally diminishes and reaches an asymptote for a certain number of trees. Also to keep in mind, increasing the number of trees increases the prediction time linearly." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1880 <param name="classifier_rf_acc" label="classifier.rf.acc" optional="false" value="0.01" help="Sufficient accuracy (OOB error)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1881 <param name="classifier_knn_k" label="classifier.knn.k" optional="false" value="32" help="The number of neighbors to use." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1882 <param name="rand" label="rand" optional="true" help="Set specific seed. with integer value." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1883 <param type="select" name="io_out_outformat" label="io.out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1884 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1885 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1886 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1887 <param type="select" name="io_confmatout_outformat" label="io.confmatout_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1888 <option value="text/csv">text/csv</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
1889 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1890 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
1891 <when value="OTB.SampleSelection">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1892 <param name="in" label="in" optional="false" help="Support image that will be classified" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1893 <param name="mask" label="mask" optional="false" help="Validity mask (only pixels corresponding to a mask value greater than 0 will be used for statistics)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1894 <param name="vec" label="vec" optional="false" help="Input geometries to analyse" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1895 <param name="instats" label="instats" optional="false" help="Input file storing statistics (XML format)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1896 <param name="sampler" label="sampler" optional="false" value="periodic" help="Type of sampling (periodic, pattern based, random)" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1897 <option value="periodic">periodic</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1898 <option value="random">random</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1899 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1900 <param name="sampler_periodic_jitter" label="sampler.periodic.jitter" optional="true" value="0" help="Jitter amplitude added during sample selection (0 = no jitter)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1901 <param name="strategy" label="strategy" optional="false" value="smallest" help="strategy" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1902 <option value="byclass">byclass</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1903 <option value="constant">constant</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1904 <option value="percent">percent</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1905 <option value="total">total</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1906 <option value="smallest">smallest</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1907 <option value="all">all</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1908 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1909 <param name="strategy_byclass_in" label="strategy.byclass.in" optional="false" help="Number of samples by class (CSV format with class name in 1st column and required samples in the 2nd." type="data" format="txt"/>
1
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parents: 0
diff changeset
1910 <param name="strategy_constant_nb" label="strategy.constant.nb" optional="false" value="" help="Number of samples for all classes" type="integer"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1911 <param name="strategy_percent_p" label="strategy.percent.p" optional="false" value="0.5" help="The percentage to use" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1912 <param name="strategy_total_v" label="strategy.total.v" optional="false" value="1000" help="The number of samples to generate" type="integer"/>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
1913 <param name="field" label="field" optional="false" value="" help="Name of the field carrying the class name in the input vectors." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1914 <param name="layer" label="layer" optional="true" value="0" help="Layer index to read in the input vector file." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1915 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1916 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1917 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1918 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1919 <param name="rand" label="rand" optional="true" help="Set specific seed. with integer value." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1920 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1921 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1922 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1923 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1924 <param type="select" name="outrates_outformat" label="outrates_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1925 <option value="text/csv">text/csv</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1926 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1927 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1928 <when value="OTB.CompareImages">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1929 <param name="ref_in" label="ref.in" optional="false" help="Image used as reference in the comparison" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1930 <param name="ref_channel" label="ref.channel" optional="false" value="1" help="Used channel for the reference image" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
1931 <param name="meas_in" label="meas.in" optional="false" help="Image used as measured in the comparison" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1932 <param name="meas_channel" label="meas.channel" optional="false" value="1" help="Used channel for the measured image" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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1933 <param name="roi_startx" label="roi.startx" optional="false" value="0" help="ROI start x position." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1934 <param name="roi_starty" label="roi.starty" optional="false" value="0" help="ROI start y position." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1935 <param name="roi_sizex" label="roi.sizex" optional="false" value="0" help="Size along x in pixels." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1936 <param name="roi_sizey" label="roi.sizey" optional="false" value="0" help="Size along y in pixels." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1937 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1938 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1939 <when value="OTB.VertexComponentAnalysis">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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1940 <param name="in" label="in" optional="false" help="Input hyperspectral data cube" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1941 <param name="ne" label="ne" optional="false" value="1" help="The number of endmembers to extract from the hyperspectral image." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1942 <param name="outendm" label="outendm" optional="false" value="float" help="Endmembers, stored in aone-line multi-spectral image.Each pixel corresponds to oneendmembers and each band values corresponds to the spectralsignature of the corresponding endmember." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1943 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1944 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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1945 <param name="rand" label="rand" optional="true" help="Set specific seed. with integer value." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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1946 <param type="select" name="outendm_outformat" label="outendm_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1947 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1948 </param>
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1949 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1950 <when value="OTB.SplitImage">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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1951 <param name="in" label="in" optional="false" help="Input multiband image filename." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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1952 <param name="out" label="out" optional="false" value="float" help="The output filename will be used to get the prefix an the extension of the output written's image. For example with outimage.tif as output filename, the generated images will had an indice (corresponding at each bands) between the prefix and the extension, such as: outimage_0.tif and outimage_1.tif (if 2 bands)." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1953 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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1954 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1955 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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1956 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1957 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1958 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1959 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1960 <when value="OTB.DownloadSRTMTiles">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1961 <param name="il" label="il" optional="false" help="List of images on which you want to determine corresponding SRTM tiles." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1962 <param name="vl" label="vl" optional="false" help="List of vector data files on which you want to determine corresponding SRTM tiles." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1963 <param name="names" label="names" optional="true" help="List of SRTM tile names to download. This list is added to the tiles derived from input images or vectors.The names should follow the SRTM tile naming convention, for instance N43E001." type="text"/>
1
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diff changeset
1964 <param name="tiledir" label="tiledir" optional="false" value="" help="Directory where SRTM tiles are stored. In download mode, the zipped archives will be downloaded to this directory. You'll need to unzip all tile files before using them in your application. In any case, this directory will be inspected to check which tiles are already downloaded." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1965 <param name="mode" label="mode" optional="false" value="download" help="mode" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1966 <option value="download">download</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1967 <option value="list">list</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1968 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1969 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1970 <when value="OTB.ComputeOGRLayersFeaturesStatistics">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1971 <param name="inshp" label="inshp" optional="false" help="Name of the input shapefile" type="data" format="txt"/>
1
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1972 <param name="feat" label="feat" optional="false" value="" help="List of features to consider for statistics." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
1973 <param type="select" name="outstats_outformat" label="outstats_outformat" help="Output format">
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parents:
diff changeset
1974 <option value="text/xml">text/xml</option>
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parents:
diff changeset
1975 </param>
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ecology
parents:
diff changeset
1976 </when>
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ecology
parents:
diff changeset
1977 <when value="OTB.LSMSSmallRegionsMerging">
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ecology
parents:
diff changeset
1978 <param name="in" label="in" optional="false" help="The input image, containing initial spectral signatures corresponding to the segmented image (inseg)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1979 <param name="inseg" label="inseg" optional="false" help="Segmented image where each pixel value is the unique integer label of the segment it belongs to." type="data" format="txt"/>
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ecology
parents:
diff changeset
1980 <param name="out" label="out" optional="false" value="uint8" help="The output image. The output image is the segmented image where the minimal segments have been merged. An ecoding of uint32 is advised." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1981 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1982 </param>
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ecology
parents:
diff changeset
1983 <param name="minsize" label="minsize" optional="true" value="50" help="Minimum Segment Size. If, after the segmentation, a segment is of size lower than this criterion, the segment is merged with the segment that has the closest sepctral signature." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1984 <param name="tilesizex" label="tilesizex" optional="false" value="500" help="Size of tiles along the X-axis for tile-wise processing." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1985 <param name="tilesizey" label="tilesizey" optional="false" value="500" help="Size of tiles along the Y-axis for tile-wise processing." type="integer"/>
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ecology
parents:
diff changeset
1986 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
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ecology
parents:
diff changeset
1987 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
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ecology
parents:
diff changeset
1988 <expand macro="format_options"/>
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ecology
parents:
diff changeset
1989 </param>
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ecology
parents:
diff changeset
1990 </when>
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ecology
parents:
diff changeset
1991 <when value="OTB.PixelValue">
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ecology
parents:
diff changeset
1992 <param name="in" label="in" optional="false" help="Input image" type="data" format="txt"/>
1
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ecology
parents: 0
diff changeset
1993 <param name="coordx" label="coordx" optional="false" value="" help="This will be the X coordinate interpreted depending on the chosen mode" type="float"/>
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ecology
parents: 0
diff changeset
1994 <param name="coordy" label="coordy" optional="false" value="" help="This will be the Y coordinate interpreted depending on the chosen mode" type="float"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1995 <param name="mode" label="mode" optional="false" value="index" help="Different modes can be selected, default mode is Index." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
1996 <option value="index">index</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
1997 <option value="physical">physical</option>
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ecology
parents:
diff changeset
1998 <option value="epsg">epsg</option>
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ecology
parents:
diff changeset
1999 </param>
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ecology
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diff changeset
2000 <param name="mode_epsg_code" label="mode.epsg.code" optional="true" help="This code is used to define a geographical coordinate system. If no system is specified, WGS84 (EPSG : 4326) is used by default." type="integer"/>
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ecology
parents:
diff changeset
2001 <param name="cl" label="cl" optional="true" help="Displayed channels" type="text"/>
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ecology
parents:
diff changeset
2002 </when>
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ecology
parents:
diff changeset
2003 <when value="OTB.MorphologicalClassification">
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ecology
parents:
diff changeset
2004 <param name="in" label="in" optional="false" help="The input image to be classified." type="data" format="txt"/>
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ecology
parents:
diff changeset
2005 <param name="out" label="out" optional="false" value="float" help="The output classified image with 3 different values (0 : Flat, 1 : Convex, 2 : Concave)" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2006 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2007 </param>
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ecology
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diff changeset
2008 <param name="channel" label="channel" optional="false" value="1" help="The selected channel index for input image" type="integer"/>
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ecology
parents:
diff changeset
2009 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
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ecology
parents:
diff changeset
2010 <param name="structype" label="structype" optional="false" value="ball" help="Choice of the structuring element type" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2011 <option value="ball">ball</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
2012 <option value="cross">cross</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
2013 </param>
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ecology
parents:
diff changeset
2014 <param name="radius" label="radius" optional="false" value="5" help="Radius of the structuring element (in pixels), default value is 5." type="integer"/>
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parents:
diff changeset
2015 <param name="sigma" label="sigma" optional="false" value="0.5" help="Sigma value for leveling tolerance, default value is 0.5." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2016 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2017 <expand macro="format_options"/>
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parents:
diff changeset
2018 </param>
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parents:
diff changeset
2019 </when>
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ecology
parents:
diff changeset
2020 <when value="OTB.LargeScaleMeanShift">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
2021 <param name="in" label="in" optional="false" help="The input image can be any single or multiband image. Beware of pontential imbalance between bands ranges as it may alter euclidean distance." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2022 <param name="spatialr" label="spatialr" optional="true" value="5" help="Radius of the spatial neighborhood for averaging. Higher values will result in more smoothing and higher processing time." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
2023 <param name="ranger" label="ranger" optional="true" value="15" help="Threshold on spectral signature euclidean distance (expressed in radiometry unit) to consider neighborhood pixel for averaging. Higher values will be less edge-preserving (more similar to simple average in neighborhood), whereas lower values will result in less noise smoothing. Note that this parameter has no effect on processing time." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2024 <param name="minsize" label="minsize" optional="true" value="50" help="Minimum Segment Size. If, after the segmentation, a segment is of size lower than this criterion, the segment is merged with the segment that has the closest sepctral signature." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2025 <param name="tilesizex" label="tilesizex" optional="false" value="500" help="Size of tiles along the X-axis for tile-wise processing." type="integer"/>
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ecology
parents:
diff changeset
2026 <param name="tilesizey" label="tilesizey" optional="false" value="500" help="Size of tiles along the Y-axis for tile-wise processing." type="integer"/>
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ecology
parents:
diff changeset
2027 <param name="mode" label="mode" optional="false" value="vector" help="Type of segmented output" type="select">
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ecology
parents:
diff changeset
2028 <option value="vector">vector</option>
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parents:
diff changeset
2029 <option value="raster">raster</option>
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diff changeset
2030 </param>
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diff changeset
2031 <param name="mode_vector_imfield" label="mode.vector.imfield" optional="false" help="This is an optional support image that can be used to compute field values in each region. Otherwise, the input image is used as support." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2032 <param name="mode_raster_out" label="mode.raster.out" optional="false" value="uint8" help="It corresponds to the output of the small region merging step." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2033 <expand macro="out_options"/>
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diff changeset
2034 </param>
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diff changeset
2035 <param name="cleanup" label="cleanup" optional="false" value="False" help="If activated, the application will try to clean all temporary files it created" type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
2036 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
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ecology
parents:
diff changeset
2037 <param type="select" name="mode_vector_out_outformat" label="mode.vector.out_outformat" help="Output format">
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parents:
diff changeset
2038 <option value="text/xml">text/xml</option>
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diff changeset
2039 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
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diff changeset
2040 <option value="application/json">application/json</option>
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ecology
parents:
diff changeset
2041 <option value="application/zip">application/zip</option>
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diff changeset
2042 </param>
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ecology
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diff changeset
2043 <param type="select" name="mode_raster_out_outformat" label="mode.raster.out_outformat" help="Output format">
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ecology
parents:
diff changeset
2044 <expand macro="format_options"/>
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diff changeset
2045 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2046 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2047 <when value="OTB.TrainRegression">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2048 <param name="io_il" label="io.il" optional="false" help="A list of input images. First (n-1) bands should contain the predictor. The last band should contain the output value to predict." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2049 <param name="io_csv" label="io.csv" optional="false" help="Input CSV file containing the predictors, and the output values in last column. Only used when no input image is given" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2050 <param name="io_imstat" label="io.imstat" optional="false" help="Input XML file containing the mean and the standard deviation of the input images." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2051 <param name="sample_mt" label="sample.mt" optional="false" value="1000" help="Maximum number of training predictors (default = 1000) (no limit = -1)." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2052 <param name="sample_mv" label="sample.mv" optional="false" value="1000" help="Maximum number of validation predictors (default = 1000) (no limit = -1)." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2053 <param name="sample_vtr" label="sample.vtr" optional="false" value="0.5" help="Ratio between training and validation samples (0.0 = all training, 1.0 = all validation) (default = 0.5)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2054 <param name="classifier" label="classifier" optional="false" value="libsvm" help="Choice of the classifier to use for the training." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2055 <option value="libsvm">libsvm</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2056 <option value="dt">dt</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2057 <option value="ann">ann</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2058 <option value="rf">rf</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2059 <option value="knn">knn</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2060 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2061 <param name="classifier_libsvm_k" label="classifier.libsvm.k" optional="false" value="linear" help="SVM Kernel Type." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2062 <option value="linear">linear</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2063 <option value="rbf">rbf</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2064 <option value="poly">poly</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2065 <option value="sigmoid">sigmoid</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2066 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2067 <param name="classifier_libsvm_m" label="classifier.libsvm.m" optional="false" value="epssvr" help="Type of SVM formulation." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2068 <option value="epssvr">epssvr</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2069 <option value="nusvr">nusvr</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2070 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2071 <param name="classifier_libsvm_c" label="classifier.libsvm.c" optional="false" value="1" help="SVM models have a cost parameter C (1 by default) to control the trade-off between training errors and forcing rigid margins." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2072 <param name="classifier_libsvm_nu" label="classifier.libsvm.nu" optional="false" value="0.5" help="Cost parameter Nu, in the range 0..1, the larger the value, the smoother the decision." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2073 <param name="classifier_libsvm_opt" label="classifier.libsvm.opt" optional="false" value="False" help="SVM parameters optimization flag." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2074 <param name="classifier_libsvm_prob" label="classifier.libsvm.prob" optional="false" value="False" help="Probability estimation flag." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2075 <param name="classifier_libsvm_eps" label="classifier.libsvm.eps" optional="false" value="0.001" help="The distance between feature vectors from the training set and the fitting hyper-plane must be less than Epsilon. For outliersthe penalty mutliplier is set by C." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2076 <param name="classifier_dt_max" label="classifier.dt.max" optional="false" value="10" help="The training algorithm attempts to split each node while its depth is smaller than the maximum possible depth of the tree. The actual depth may be smaller if the other termination criteria are met, and/or if the tree is pruned." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2077 <param name="classifier_dt_min" label="classifier.dt.min" optional="false" value="10" help="If the number of samples in a node is smaller than this parameter, then this node will not be split." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2078 <param name="classifier_dt_ra" label="classifier.dt.ra" optional="false" value="0.01" help="If all absolute differences between an estimated value in a node and the values of the train samples in this node are smaller than this regression accuracy parameter, then the node will not be split further." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2079 <param name="classifier_dt_cat" label="classifier.dt.cat" optional="false" value="10" help="Cluster possible values of a categorical variable into K &amp;lt;= cat clusters to find a suboptimal split." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2080 <param name="classifier_dt_f" label="classifier.dt.f" optional="false" value="0" help="If cv_folds &gt; 1, then it prunes a tree with K-fold cross-validation where K is equal to cv_folds." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2081 <param name="classifier_dt_r" label="classifier.dt.r" optional="false" value="False" help="If true, then a pruning will be harsher. This will make a tree more compact and more resistant to the training data noise but a bit less accurate." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2082 <param name="classifier_dt_t" label="classifier.dt.t" optional="false" value="False" help="If true, then pruned branches are physically removed from the tree." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2083 <param name="classifier_ann_t" label="classifier.ann.t" optional="false" value="reg" help="Type of training method for the multilayer perceptron (MLP) neural network." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2084 <option value="back">back</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2085 <option value="reg">reg</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2086 </param>
1
099d42f5804c planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit b9f9ef35f2d392fa85c4ffb460cda2a9b4c69955
ecology
parents: 0
diff changeset
2087 <param name="classifier_ann_sizes" label="classifier.ann.sizes" optional="false" value="" help="The number of neurons in each intermediate layer (excluding input and output layers)." type="text"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2088 <param name="classifier_ann_f" label="classifier.ann.f" optional="false" value="sig" help="This function determine whether the output of the node is positive or not depending on the output of the transfert function." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2089 <option value="ident">ident</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2090 <option value="sig">sig</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2091 <option value="gau">gau</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2092 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2093 <param name="classifier_ann_a" label="classifier.ann.a" optional="false" value="1" help="Alpha parameter of the activation function (used only with sigmoid and gaussian functions)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2094 <param name="classifier_ann_b" label="classifier.ann.b" optional="false" value="1" help="Beta parameter of the activation function (used only with sigmoid and gaussian functions)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2095 <param name="classifier_ann_bpdw" label="classifier.ann.bpdw" optional="false" value="0.1" help="Strength of the weight gradient term in the BACKPROP method. The recommended value is about 0.1." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2096 <param name="classifier_ann_bpms" label="classifier.ann.bpms" optional="false" value="0.1" help="Strength of the momentum term (the difference between weights on the 2 previous iterations). This parameter provides some inertia to smooth the random fluctuations of the weights. It can vary from 0 (the feature is disabled) to 1 and beyond. The value 0.1 or so is good enough." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2097 <param name="classifier_ann_rdw" label="classifier.ann.rdw" optional="false" value="0.1" help="Initial value Delta_0 of update-values Delta_" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2098 <param name="classifier_ann_rdwm" label="classifier.ann.rdwm" optional="false" value="1e-07" help="Update-values lower limit Delta_" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2099 <param name="classifier_ann_term" label="classifier.ann.term" optional="false" value="all" help="Termination criteria." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2100 <option value="iter">iter</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2101 <option value="eps">eps</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2102 <option value="all">all</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2103 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2104 <param name="classifier_ann_eps" label="classifier.ann.eps" optional="false" value="0.01" help="Epsilon value used in the Termination criteria." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2105 <param name="classifier_ann_iter" label="classifier.ann.iter" optional="false" value="1000" help="Maximum number of iterations used in the Termination criteria." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2106 <param name="classifier_rf_max" label="classifier.rf.max" optional="false" value="5" help="The depth of the tree. A low value will likely underfit and conversely a high value will likely overfit. The optimal value can be obtained using cross validation or other suitable methods." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2107 <param name="classifier_rf_min" label="classifier.rf.min" optional="false" value="10" help="If the number of samples in a node is smaller than this parameter, then the node will not be split. A reasonable value is a small percentage of the total data e.g. 1 percent." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2108 <param name="classifier_rf_ra" label="classifier.rf.ra" optional="false" value="0" help="If all absolute differences between an estimated value in a node and the values of the train samples in this node are smaller than this regression accuracy parameter, then the node will not be split." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2109 <param name="classifier_rf_cat" label="classifier.rf.cat" optional="false" value="10" help="Cluster possible values of a categorical variable into K &amp;lt;= cat clusters to find a suboptimal split." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2110 <param name="classifier_rf_var" label="classifier.rf.var" optional="false" value="0" help="The size of the subset of features, randomly selected at each tree node, that are used to find the best split(s). If you set it to 0, then the size will be set to the square root of the total number of features." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2111 <param name="classifier_rf_nbtrees" label="classifier.rf.nbtrees" optional="false" value="100" help="The maximum number of trees in the forest. Typically, the more trees you have, the better the accuracy. However, the improvement in accuracy generally diminishes and reaches an asymptote for a certain number of trees. Also to keep in mind, increasing the number of trees increases the prediction time linearly." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2112 <param name="classifier_rf_acc" label="classifier.rf.acc" optional="false" value="0.01" help="Sufficient accuracy (OOB error)." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2113 <param name="classifier_knn_k" label="classifier.knn.k" optional="false" value="32" help="The number of neighbors to use." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2114 <param name="classifier_knn_rule" label="classifier.knn.rule" optional="false" value="mean" help="Decision rule for regression output" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2115 <option value="mean">mean</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2116 <option value="median">median</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2117 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2118 <param name="rand" label="rand" optional="true" help="Set specific seed. with integer value." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2119 <param type="select" name="io_out_outformat" label="io.out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2120 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2121 <option value="text/plain">text/plain</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2122 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2123 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2124 <when value="OTB.ContrastEnhancement">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2125 <param name="in" label="in" optional="false" help="Input image." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2126 <param name="out" label="out" optional="false" value="float" help="Output image." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2127 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2128 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2129 <param name="bins" label="bins" optional="false" value="256" help="Number of bins in the histogram" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2130 <param name="hfact" label="hfact" optional="true" help="This parameter will set the maximum height accepted in a bin on the input image histogram. The maximum height will be computed as hfact*eqHeight where eqHeight is the height of the theoretical flat histogram. The higher hfact, the higher the contrast.When using 'luminance mode', it is recommended to limit this factor to a small value (ex: 4)" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2131 <param name="nodata" label="nodata" optional="true" help="If there is a value in the image that has no visualization meaning, it can be ignored by the algorithm." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2132 <param name="spatial" label="spatial" optional="false" value="local" help="spatial" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2133 <option value="local">local</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2134 <option value="global">global</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2135 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2136 <param name="spatial_local_h" label="spatial.local.h" optional="false" value="256" help="Height of the thumbnail over which the histogram will be computed. The value is in pixels." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2137 <param name="spatial_local_w" label="spatial.local.w" optional="false" value="256" help="Width of the thumbnail over which the histogram will be computed. The value is in pixels." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2138 <param name="minmax" label="minmax" optional="false" value="auto" help="Minimum and maximum value that will bound the histogram and thus the dynamic of the resulting image. Values over those boundaries will be clipped." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2139 <option value="auto">auto</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2140 <option value="manual">manual</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2141 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2142 <param name="minmax_auto_global" label="minmax.auto.global" optional="false" value="False" help="Min/max computation will result in the same minimum and maximum for all the bands." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2143 <param name="minmax_manual_min" label="minmax.manual.min" optional="true" help="minmax.manual.min" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2144 <param name="minmax_manual_max" label="minmax.manual.max" optional="true" help="minmax.manual.max" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2145 <param name="mode" label="mode" optional="false" value="each" help="mode" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2146 <option value="each">each</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2147 <option value="lum">lum</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2148 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2149 <param name="mode_lum_red_ch" label="mode.lum.red.ch" optional="false" value="0" help="mode.lum.red.ch" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2150 <param name="mode_lum_red_coef" label="mode.lum.red.coef" optional="false" value="0.21" help="mode.lum.red.coef" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2151 <param name="mode_lum_green_ch" label="mode.lum.green.ch" optional="false" value="1" help="mode.lum.green.ch" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2152 <param name="mode_lum_green_coef" label="mode.lum.green.coef" optional="false" value="0.71" help="mode.lum.green.coef" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2153 <param name="mode_lum_blue_ch" label="mode.lum.blue.ch" optional="false" value="2" help="mode.lum.blue.ch" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2154 <param name="mode_lum_blue_coef" label="mode.lum.blue.coef" optional="false" value="0.08" help="mode.lum.blue.coef" type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2155 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2156 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2157 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2158 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2159 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2160 <when value="OTB.SARDecompositions">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2161 <param name="inhh" label="inhh" optional="false" help="Input image (HH)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2162 <param name="inhv" label="inhv" optional="false" help="Input image (HV)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2163 <param name="invh" label="invh" optional="false" help="Input image (VH)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2164 <param name="invv" label="invv" optional="false" help="Input image (VV)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2165 <param name="out" label="out" optional="false" value="float" help="Output image" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2166 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2167 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2168 <param name="decomp" label="decomp" optional="false" value="haa" help="decomp" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2169 <option value="haa">haa</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2170 <option value="barnes">barnes</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2171 <option value="huynen">huynen</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2172 <option value="pauli">pauli</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2173 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2174 <param name="inco_kernelsize" label="inco.kernelsize" optional="true" value="3" help="Minute (0-59)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2175 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2176 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2177 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2178 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2179 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2180 <when value="OTB.EdgeExtraction">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2181 <param name="in" label="in" optional="false" help="The input image on which the features are computed." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2182 <param name="channel" label="channel" optional="false" value="1" help="The selected channel index" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2183 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2184 <param name="filter" label="filter" optional="false" value="gradient" help="Choice of edge feature" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2185 <option value="gradient">gradient</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2186 <option value="sobel">sobel</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2187 <option value="touzi">touzi</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2188 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2189 <param name="filter_touzi_xradius" label="filter.touzi.xradius" optional="false" value="1" help="filter.touzi.xradius" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2190 <param name="filter_touzi_yradius" label="filter.touzi.yradius" optional="false" value="1" help="filter.touzi.yradius" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2191 <param name="out" label="out" optional="false" value="float" help="Output image containing the edge features." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2192 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2193 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2194 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2195 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2196 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2197 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2198 <when value="OTB.VectorDataReprojection">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2199 <param name="in_vd" label="in.vd" optional="false" help="The input vector data to reproject" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2200 <param name="in_kwl" label="in.kwl" optional="false" help="Optional input image to fill vector data with image kwl." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2201 <param name="out_proj" label="out.proj" optional="false" value="image" help="out.proj" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2202 <option value="image">image</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2203 <option value="user">user</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2204 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2205 <param name="out_proj_image_in" label="out.proj.image.in" optional="false" help="Projection map will be found using image metadata" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2206 <param name="out_proj_user_map" label="out.proj.user.map" optional="false" value="utm" help="Defines the map projection to be used." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2207 <option value="utm">utm</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2208 <option value="lambert2">lambert2</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2209 <option value="lambert93">lambert93</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2210 <option value="wgs">wgs</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2211 <option value="epsg">epsg</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2212 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2213 <param name="out_proj_user_map_utm_zone" label="out.proj.user.map.utm.zone" optional="false" value="31" help="The zone number ranges from 1 to 60 and allows defining the transverse mercator projection (along with the hemisphere)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2214 <param name="out_proj_user_map_utm_northhem" label="out.proj.user.map.utm.northhem" optional="false" value="False" help="The transverse mercator projections are defined by their zone number as well as the hemisphere. Activate this parameter if your image is in the northern hemisphere." type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2215 <param name="out_proj_user_map_epsg_code" label="out.proj.user.map.epsg.code" optional="false" value="4326" help="See www.spatialreference.org to find which EPSG code is associated to your projection" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2216 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2217 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2218 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2219 <param type="select" name="out_vd_outformat" label="out.vd_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2220 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2221 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2222 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2223 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2224 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2225 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2226 <when value="OTB.ComputeModulusAndPhase">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2227 <param name="in" label="in" optional="false" help="Input image (complex single band)" type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2228 <param name="modulus" label="modulus" optional="false" value="float" help="Modulus of the input image computes with thefollowing formula: :math:`\sqrt" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2229 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2230 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2231 <param name="phase" label="phase" optional="false" value="float" help="Phase of the input image computes with the following formula::math:`\tan^" type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2232 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2233 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2234 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2235 <param type="select" name="modulus_outformat" label="modulus_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2236 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2237 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2238 <param type="select" name="phase_outformat" label="phase_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2239 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2240 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2241 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2242 <when value="OTB.LineSegmentDetection">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2243 <param name="in" label="in" optional="false" help="Input image on which lines will be detected." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2244 <param name="elev_dem" label="elev.dem" optional="true" help="This parameter allows selecting a directory containing Digital Elevation Model files. Note that this directory should contain only DEM files. Unexpected behaviour might occurs if other images are found in this directory." type="text"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2245 <param name="elev_geoid" label="elev.geoid" optional="false" help="Use a geoid grid to get the height above the ellipsoid in case there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles. A version of the geoid can be found on the OTB website(https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-data/blob/master/Input/DEM/egm96.grd)." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2246 <param name="elev_default" label="elev.default" optional="false" value="0" help="This parameter allows setting the default height above ellipsoid when there is no DEM available, no coverage for some points or pixels with no_data in the DEM tiles, and no geoid file has been set. This is also used by some application as an average elevation value." type="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2247 <param name="norescale" label="norescale" optional="false" value="False" help="By default, the input image amplitude is rescaled between [0,255]. Turn on this parameter to skip rescaling" type="boolean" truevalue="True" falsevalue="False"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2248 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2249 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2250 <option value="text/xml">text/xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff changeset
2251 <option value="application/vnd.google-earth.kml+xml">application/vnd.google-earth.kml+xml</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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parents:
diff changeset
2252 <option value="application/json">application/json</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2253 <option value="application/zip">application/zip</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2254 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2255 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
2256 <when value="OTB.LocalStatisticExtraction">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2257 <param name="in" label="in" optional="false" help="The input image to compute the features on." type="data" format="txt"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2258 <param name="channel" label="channel" optional="false" value="1" help="The selected channel index" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2259 <param name="ram" label="ram" optional="true" value="128" help="Available memory for processing (in MB)" type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2260 <param name="radius" label="radius" optional="false" value="3" help="The computational window radius." type="integer"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2261 <param name="out" label="out" optional="false" value="float" help="Output image containing the local statistical moments." type="select">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
2262 <expand macro="out_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2263 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
2264 <param type="select" name="out_outformat" label="out_outformat" help="Output format">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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diff changeset
2265 <expand macro="format_options"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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2266 </param>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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2267 </when>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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2268 </conditional>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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2269 </inputs>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2270 <outputs>
2
bcb6009d5af7 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
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diff changeset
2271 <data name="output_data" format="txt" label="$select_process"/>
0
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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2272 </outputs>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
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2273 <expand macro="tests"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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2274 <expand macro="help"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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diff changeset
2275 <expand macro="citations"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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2276 </tool>