Mercurial > repos > engineson > multiqc
diff test-data/log_fastqc.txt @ 8:c503e1c1fbad draft
Uploaded
| author | engineson |
|---|---|
| date | Thu, 25 May 2017 17:51:17 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/log_fastqc.txt Thu May 25 17:51:17 2017 -0400 @@ -0,0 +1,57 @@ +[2017-05-25 01:09:17,435] multiqc [DEBUG ] No MultiQC config found: /home/dpryan/miniconda2/lib/python2.7/site-packages/multiqc-1.0-py2.7.egg/multiqc_config.yaml +[2017-05-25 01:09:17,435] multiqc [DEBUG ] No MultiQC config found: /home/dpryan/.multiqc_config.yaml +[2017-05-25 01:09:17,435] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml +[2017-05-25 01:09:17,435] multiqc [DEBUG ] Command used: /home/dpryan/miniconda2/bin/multiqc multiqc_WDir +[2017-05-25 01:09:17,435] multiqc [DEBUG ] Could not connect to multiqc.info for version check +[2017-05-25 01:09:17,435] multiqc [INFO ] This is MultiQC v1.0 +[2017-05-25 01:09:17,435] multiqc [DEBUG ] Command : /home/dpryan/miniconda2/bin/multiqc multiqc_WDir +[2017-05-25 01:09:17,435] multiqc [DEBUG ] Working dir : /tmp/tmptvpHhR/job_working_directory/000/2/working +[2017-05-25 01:09:17,435] multiqc [INFO ] Template : default +[2017-05-25 01:09:17,436] multiqc [INFO ] Searching 'multiqc_WDir' +[2017-05-25 01:09:17,436] multiqc [DEBUG ] Analysing modules: custom_content, peddy, methylQA, qualimap, preseq, quast, rna_seqc, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, adapterRemoval, cutadapt, trimmomatic, skewer, sortmerna, fastq_screen, fastqc, clusterflow +[2017-05-25 01:09:17,436] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpExYq9v +[2017-05-25 01:09:17,570] multiqc.modules.custom_content.custom_content [DEBUG ] No custom content found +[2017-05-25 01:09:17,573] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,576] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,578] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 +[2017-05-25 01:09:17,579] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,581] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('multiqc_WDir',) +[2017-05-25 01:09:17,584] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,586] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('multiqc_WDir',) +[2017-05-25 01:09:17,589] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,591] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,594] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('multiqc_WDir',) +[2017-05-25 01:09:17,596] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('multiqc_WDir',) +[2017-05-25 01:09:17,598] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,601] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,603] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,606] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,609] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,611] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('multiqc_WDir',) +[2017-05-25 01:09:17,614] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('multiqc_WDir',) +[2017-05-25 01:09:17,617] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,619] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,621] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,624] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('multiqc_WDir',) +[2017-05-25 01:09:17,626] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('multiqc_WDir',) +[2017-05-25 01:09:17,629] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,631] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found. +[2017-05-25 01:09:17,633] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,636] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,638] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,641] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,643] multiqc.modules.adapterRemoval.adapterRemoval [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,645] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,648] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('multiqc_WDir',) +[2017-05-25 01:09:17,650] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('multiqc_WDir',) +[2017-05-25 01:09:17,652] multiqc.modules.sortmerna.sortmerna [DEBUG ] Could not find any SortMeRNA data in ('multiqc_WDir',) +[2017-05-25 01:09:17,655] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,694] multiqc.modules.fastqc.fastqc [INFO ] Found 1 reports +[2017-05-25 01:09:17,748] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('multiqc_WDir',) +[2017-05-25 01:09:17,750] multiqc [INFO ] Compressing plot data +[2017-05-25 01:09:17,802] multiqc [INFO ] Report : multiqc_report.html +[2017-05-25 01:09:17,802] multiqc [INFO ] Data : multiqc_data +[2017-05-25 01:09:17,802] multiqc [DEBUG ] Moving data file from '/tmp/tmpExYq9v/multiqc_data/multiqc_general_stats.txt' to '/tmp/tmptvpHhR/job_working_directory/000/2/working/multiqc_data' +[2017-05-25 01:09:17,803] multiqc [DEBUG ] Moving data file from '/tmp/tmpExYq9v/multiqc_data/multiqc_fastqc.txt' to '/tmp/tmptvpHhR/job_working_directory/000/2/working/multiqc_data' +[2017-05-25 01:09:17,803] multiqc [DEBUG ] Moving data file from '/tmp/tmpExYq9v/multiqc_data/multiqc_sources.txt' to '/tmp/tmptvpHhR/job_working_directory/000/2/working/multiqc_data' +[2017-05-25 01:09:17,900] multiqc [INFO ] MultiQC complete