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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit 183cebdfe3a34204fd8aa1c6dce6bf6514b94c2d
| author | erasmus-medical-center |
|---|---|
| date | Fri, 03 Nov 2017 07:23:57 -0400 |
| parents | f2c70d589596 |
| children |
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chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-B-acceptor pos-B-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads alignment-score mismatches n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge median-AS-A median-AS-B max-AS-A max-AS-B data-structure chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 10000 0 5 2 4 1 0 0.8111 0.8497 0 0.9535 0.7247 63.7843 0.844 0 0.0559 0.3651 17.303 0.8378 0 0.0289 0.0706 0.336 1.2 50 50 50 50 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 10000 0 1 1 1 0 0 0.9528 0.9528 0 0.82 2.9207 17.3314 0.9125 0 0.191 1.588 68.1747 0.8769 0 0.1269 1.3333 0.2308 2 50 50 50 50 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 10000 0 7 5 6 1 2 1 0.9375 18.7474 0.75 26.9 3 0.9425 0.0164 5.5097 20.1 42.8 0.8833 0.047 6.1587 0.1429 0.3659 1.5714 50 50 50 50 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4,n_lr_symmetry=21.99>=8.82 circular intronic 17 12 6 0 10000 0 2 2 2 0 0 0.4056 0.6934 25.3065 0 1.5 29.5 0.7746 0.2254 0.866 0 93 0 1 0 0 0.3529 2 50 50 50 50 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8,n_lr_symmetry=89.38>=11.38 circular intronic 12 8 4 0 10000 0 2 2 2 0 0 0 0.4056 0 0 0 68 0 1 0 0 58 0 1 0 0 0.3333 2 50 50 50 50 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7,n_lr_symmetry=91.27>=13.84 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 49 0 1 0 0 77 0 1 0 0 0.3333 2 50 50 50 50 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7,n_lr_symmetry=94.85>=13.84 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 40 0 1 0 0 86 0 1 0 0 0.3333 2 50 50 50 50 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7,n_lr_symmetry=99.3>=13.84 circular intronic 9 6 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 94 0 1 0 0 32 0 1 0 0 0.3333 2 50 50 50 50 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7,n_lr_symmetry=84.91>=13.84 circular intronic 9 11 3 0 10000 0 1 1 1 0 0 0 0 0 0 0 45 0 1 0 0 72 0 1 0 0 0.6111 2 50 50 50 50 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8,n_lr_symmetry=29.55>=16.19 circular intronic 7 4 2 1 10000 0 1 1 1 0 0 0.5794 0.5794 0 1 19 81.6667 0.866 0.3333 10.9697 1.5 34.5 0.866 0.3333 0.866 0.5 0.2857 2 50 50 50 50 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 2 54 1 0 0 0 53 0 1 0 0 0.3333 2 50 50 50 50 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4,n_lr_symmetry=88.57>=17.71 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 80 0 1 0 8 38 1 0 0 0 0.3333 2 50 50 50 50 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4,n_lr_symmetry=91.42>=17.71 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 46 0 1 0 1 79 1 0 0 0 0.3333 2 50 50 50 50 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4,n_lr_symmetry=100.69>=17.71 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 1 1 0 0 0 97 0 1 0 2 27 1 0 0 0 0.3333 2 50 50 50 50 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7,n_lr_symmetry=89.64>=17.71 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 56 0 1 0 0 70 0 1 0 0 0.3333 2 50 50 50 50 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7,n_lr_symmetry=101.92>=17.71 circular intronic 6 4 2 0 10000 0 1 1 1 0 0 0 0 0 0 0 28 0 1 0 0 98 0 1 0 0 0.3333 2 50 50 50 50 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4,n_lr_symmetry=90.92>=19.54 circular intronic 5 4 2 0 10000 0 1 1 1 0 0 1 1 45.4588 0 0 45 0 1 0 2 79 1 0 0 0 0.4 2 50 50 50 50 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8,n_lr_symmetry=90.21>=24.68 circular intronic 3 3 1 1 10000 0 2 2 2 0 0 0 1 0 0 0 73 0 1 0 0 53 0 1 0 1 0.5 2 50 50 50 50 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7,n_lr_symmetry=91.27>=24.68 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 77 0 1 0 0 49 0 1 0 0 0.3333 2 50 50 50 50 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7,n_lr_symmetry=69.4>=24.68 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 56 0 1 0 0 0.3333 2 50 50 50 50 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7,n_lr_symmetry=90.44>=24.68 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 52 0 1 0 0 74 0 1 0 0 0.3333 2 50 50 50 50 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7,n_lr_symmetry=93.47>=24.68 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 41 0 1 0 0 84 0 1 0 0 0.3333 2 50 50 50 50 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7,n_lr_symmetry=104.05>=24.68 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 101 0 1 0 0 25 0 1 0 0 0.3333 2 50 50 50 50 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7,n_lr_symmetry=72.92>=24.68 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 31 0 1 0 0 66 0 1 0 0 0.3333 2 50 50 50 50 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7,n_lr_symmetry=108.67>=24.68 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 19 0 1 0 0 107 0 1 0 0 0.3333 2 50 50 50 50 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7,n_lr_symmetry=38.01>=24.68 circular intronic 3 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 22 0 1 0 0 31 0 1 0 0 0.3333 2 50 50 50 50 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7,n_lr_symmetry=95.85>=24.68 linear intronic 3 9 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 38 0 1 0 0 88 0 1 0 0 1.5 2 50 50 50 50 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 10000 0 1 1 1 0 0 1 1 0 0.4056 44 82 1 0 0 0 120 0 1 0 40 0.5 2 50 50 50 50 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7,n_lr_symmetry=89.04>=28.44 circular intronic 2 2 1 0 10000 0 1 1 1 0 0 0 0 0 0 0 75 0 1 0 0 48 0 1 0 0 0.5 2 50 50 50 50 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7,n_lr_symmetry=178.19>=28.44 linear intronic 2 0 0 2 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 40 0 2 50 50 50 50 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7,n_lr_symmetry=178.19>=33.57 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 50 50 50 50 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7,n_lr_symmetry=131.9>=33.57 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 39 0 1 0 20 0 2 50 50 50 50 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7,n_lr_symmetry=178.19>=33.57 linear intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 126 0 1 0 20 0 2 50 50 50 50 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7,n_lr_symmetry=175.36>=33.57 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 124 0 1 0 0 124 0 1 0 20 0 2 50 50 50 50 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7,n_lr_symmetry=88.46>=33.57 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 65 0 1 0 0 60 0 1 0 20 0 2 50 50 50 50 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7,n_lr_symmetry=176.08>=33.57 circular intronic 1 0 0 1 10000 0 1 1 1 0 0 0 0 0 0 0 126 0 1 0 0 123 0 1 0 20 0 2 50 50 50 50 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)