Mercurial > repos > erasmus-medical-center > mycrobiota
comparison test-data/summarylog2.txt @ 0:607c5e7e0a64 draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
| author | erasmus-medical-center |
|---|---|
| date | Wed, 13 Dec 2017 10:09:50 -0500 |
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| -1:000000000000 | 0:607c5e7e0a64 |
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| 1 Linux version | |
| 2 | |
| 3 Using ReadLine | |
| 4 | |
| 5 Running 64Bit Version | |
| 6 | |
| 7 mothur v.1.36.1 | |
| 8 Last updated: 7/27/2015 | |
| 9 | |
| 10 by | |
| 11 Patrick D. Schloss | |
| 12 | |
| 13 Department of Microbiology & Immunology | |
| 14 University of Michigan | |
| 15 pschloss@umich.edu | |
| 16 http://www.mothur.org | |
| 17 | |
| 18 When using, please cite: | |
| 19 Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41. | |
| 20 | |
| 21 Distributed under the GNU General Public License | |
| 22 | |
| 23 Type 'help()' for information on the commands that are available | |
| 24 | |
| 25 Type 'quit()' to exit program | |
| 26 Interactive Mode | |
| 27 | |
| 28 | |
| 29 mothur > summary.seqs(fasta=fasta.dat,processors=1) | |
| 30 | |
| 31 Using 1 processors. | |
| 32 | |
| 33 Start End NBases Ambigs Polymer NumSeqs | |
| 34 Minimum: 1 249 249 0 4 1 | |
| 35 2.5%-tile: 1 250 250 0 4 14 | |
| 36 25%-tile: 1 255 255 0 5 137 | |
| 37 Median: 1 256 256 0 5 273 | |
| 38 75%-tile: 1 256 256 0 5 409 | |
| 39 97.5%-tile: 1 258 258 0 5 532 | |
| 40 Maximum: 1 263 263 0 6 545 | |
| 41 Mean: 1 255.739 255.739 0 4.94679 | |
| 42 # of Seqs: 545 | |
| 43 | |
| 44 Output File Names: | |
| 45 fasta.summary | |
| 46 | |
| 47 It took 0 secs to summarize 545 sequences. | |
| 48 quit | |
| 49 | |
| 50 mothur > quit |