Mercurial > repos > ethevenot > biosigner
annotate build.xml @ 0:48e4be935243 draft
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
author | ethevenot |
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date | Wed, 27 Jul 2016 11:40:20 -0400 |
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children | fa80bd02055f |
rev | line source |
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0
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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1 <project name="w4m.biosigner" default="all"> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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2 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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3 <property name="tool.xml" value="biosigner_config.xml"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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4 <property name="conda.dir" value="${user.home}/w4m-conda"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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5 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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6 <!--~~~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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7 ~ ALL ~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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8 ~~~~~--> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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9 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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10 <target name="all"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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11 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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12 <!--~~~~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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13 ~ TEST ~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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14 ~~~~~--> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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15 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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16 <target name="test" depends="planemo.lint,planemo.test"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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17 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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18 <!--~~~~~~~~~~~~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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19 ~ PLANEMO LINT ~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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20 ~~~~~~~~~~~~~--> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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21 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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22 <target name="planemo.lint"> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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23 <exec executable="planemo" failonerror="true"> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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24 <arg value="lint"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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25 <arg value="${tool.xml}"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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26 </exec> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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27 </target> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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28 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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29 <!--~~~~~~~~~~~~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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30 ~ PLANEMO TEST ~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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31 ~~~~~~~~~~~~~--> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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32 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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33 <target name="planemo.test" depends="planemo.conda.install"> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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34 <exec executable="planemo" failonerror="true"> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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35 <arg value="test"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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36 <arg value="--conda_prefix"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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37 <arg value="${conda.dir}"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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38 <arg value="--galaxy_branch"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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39 <arg value="release_16.01"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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40 <arg value="--conda_dependency_resolution"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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41 <arg value="${tool.xml}"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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42 </exec> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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43 </target> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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44 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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45 <!--~~~~~~~~~~~~~~~~~~~~~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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46 ~ PLANEMO CONDA INSTALL ~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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47 ~~~~~~~~~~~~~~~~~~~~~~--> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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48 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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49 <target name="planemo.conda.install" depends="planemo.conda.init"> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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50 <exec executable="planemo" failonerror="true"> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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51 <arg value="conda_install"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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52 <arg value="--conda_prefix"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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53 <arg value="${conda.dir}"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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54 <arg value="${tool.xml}"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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55 </exec> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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56 </target> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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57 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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58 <!--~~~~~~~~~~~~~~~~~~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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59 ~ PLANEMO CONDA INIT ~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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60 ~~~~~~~~~~~~~~~~~~~--> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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61 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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62 <available file="${conda.dir}" property="conda.is.installed"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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63 <target name="planemo.conda.init" unless="conda.is.installed"> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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64 <exec executable="planemo" failonerror="true"> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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65 <arg value="conda_init"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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66 <arg value="--conda_prefix"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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67 <arg value="${conda.dir}"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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68 </exec> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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69 </target> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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70 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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71 <!--~~~~~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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72 ~ CLEAN ~ |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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changeset
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73 ~~~~~~--> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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74 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
changeset
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75 <target name="clean"> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
diff
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76 <delete dir="${conda.dir}"/> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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77 </target> |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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78 |
48e4be935243
planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit b8af709c9fd6ed283fc4e4249dcf692556927b2d
ethevenot
parents:
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79 </project> |