Mercurial > repos > ethevenot > biosigner

annotate runit/biosigner_tests.R @ 2:b2414be87d4b draft

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planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
author ethevenot
date Sat, 06 Aug 2016 12:17:12 -0400
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b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
diff changeset
1 test_sacurine_default <- function() {
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
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2
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
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3 testDirC <- "sacurine"
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
diff changeset
4 argLs <- list(respC = "gender",
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
diff changeset
5 methodC = "all",
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
diff changeset
6 bootI = "5",
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
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7 pvalN = "0.05",
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
diff changeset
8 seedI = "123")
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
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9
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
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10 argLs <- c(defaultArgF(testDirC), argLs)
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
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11 outLs <- wrapperCallF(argLs)
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
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12
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
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13 checkEquals(outLs[["varDF"]]["Oxoglutaric acid", "gender_tier_S"], "plsda|randomforest|svm")
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
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14
b2414be87d4b planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit d85321a93588817e9e8884b90dde6331292bbe79
ethevenot
parents:
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15 }