Mercurial > repos > ethevenot > transformation
changeset 2:0ccfc3e15710 draft
planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit b0373e2f4702a572450205419e2d64579c24c9ae
| author | ethevenot |
|---|---|
| date | Tue, 06 Jun 2017 11:55:21 -0400 |
| parents | d9e05021553c |
| children | cc0e9eff0de2 |
| files | transformation_config.xml transformation_wrapper.R |
| diffstat | 2 files changed, 15 insertions(+), 1 deletions(-) [+] |
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--- a/transformation_config.xml Sat Aug 06 12:02:52 2016 -0400 +++ b/transformation_config.xml Tue Jun 06 11:55:21 2017 -0400 @@ -2,7 +2,6 @@ <description>Transforms the dataMatrix intensity values</description> <requirements> - <requirement type="package" version="3.2.2">R</requirement> <requirement type="package">r-batch</requirement> </requirements>
--- a/transformation_wrapper.R Sat Aug 06 12:02:52 2016 -0400 +++ b/transformation_wrapper.R Tue Jun 06 11:55:21 2017 -0400 @@ -80,6 +80,21 @@ cat("\nEnd of the '", modNamC, "' Galaxy module call: ", format(Sys.time(), "%a %d %b %Y %X"), "\n", sep = "") +cat("\n\n\n============================================================================") +cat("\nAdditional information about the call:\n") +cat("\n1) Parameters:\n") +print(cbind(value = argVc)) + +cat("\n2) Session Info:\n") +sessioninfo <- sessionInfo() +cat(sessioninfo$R.version$version.string,"\n") +cat("Main packages:\n") +for (pkg in names(sessioninfo$otherPkgs)) { cat(paste(pkg,packageVersion(pkg)),"\t") }; cat("\n") +cat("Other loaded packages:\n") +for (pkg in names(sessioninfo$loadedOnly)) { cat(paste(pkg,packageVersion(pkg)),"\t") }; cat("\n") + +cat("============================================================================\n") + sink() options(stringsAsFactors = strAsFacL)