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1 <?xml version="1.0"?>
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2 <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True">
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3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
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4 <stdio>
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5 <exit_code range="1:" />
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6 <exit_code range=":-1" />
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7 </stdio>
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10
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8 <command>
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9 <![CDATA[
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10 mkdir -p ${tool.name}_tmp &&
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11 python ${__tool_directory__}/json_data_source_mod.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "${tool.name}_tmp"
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12 ]]>
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13 </command>
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14 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php" >
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15 <display>Go to GDCWebApp service $GALAXY_URL</display>
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16 <param name="URL" type="hidden" value="" />
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17 </inputs>
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18 <outputs>
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10
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19 <data name="output1" format="auto" visible="False" />
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20 <collection name="list_output" type="list:list" label="${tool.name} Output Collection">
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21 <discover_datasets pattern="(?P<archive_name>.*)_(?P<file_name>.*)\..*" ext="auto" visible="True" directory="${tool.name}_tmp" />
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6
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22 </collection>
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23 </outputs>
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24 <options sanitize="False" refresh="True" />
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25 </tool>
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