comparison gdcwebapp.xml @ 46:33e5c1b7b9af draft

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45:b0d8d9cdf942

    <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
    <requirements>
        <requirement type="package" version="2.7.10">python</requirement>
        <requirement type="package" version="1.0.0">json_collect_data_source</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" />
        <exit_code range=":-1" />
    </stdio>
    <command>
<![CDATA[
    python '$__tool_directory__/jcds_wrapper.py' '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'
]]>
    </command>
    <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
        <display>Go to GDCWebApp service $GALAXY_URL</display>
        <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" />
    </inputs>
    <outputs>

46:33e5c1b7b9af

    <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
    <requirements>
        <requirement type="package" version="2.7.10">python</requirement>
        <requirement type="package" version="1.0.0">json_collect_data_source</requirement>
    </requirements>
    <command detect_errors="exit_code">json_collect_data_source.py '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'</command>
    <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
        <display>Go to GDCWebApp service $GALAXY_URL</display>
        <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" />
    </inputs>
    <outputs>