Mercurial > repos > fabio > gdcwebapp

diff gdcwebapp.xml @ 46:33e5c1b7b9af draft

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author fabio
date Thu, 22 Jun 2017 22:27:55 -0400
parents bab44ade984c
children 7d3117898196
line wrap: on
line diff
--- a/gdcwebapp.xml	Thu Jun 22 16:34:14 2017 -0400
+++ b/gdcwebapp.xml	Thu Jun 22 22:27:55 2017 -0400
@@ -5,15 +5,7 @@
         <requirement type="package" version="2.7.10">python</requirement>
         <requirement type="package" version="1.0.0">json_collect_data_source</requirement>
     </requirements>
-    <stdio>
-        <exit_code range="1:" />
-        <exit_code range=":-1" />
-    </stdio>
-    <command>
-<![CDATA[
-    python '$__tool_directory__/jcds_wrapper.py' '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'
-]]>
-    </command>
+    <command detect_errors="exit_code">json_collect_data_source.py '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'</command>
     <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
         <display>Go to GDCWebApp service $GALAXY_URL</display>
         <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" />