Mercurial > repos > fangly > grinder
view tool-data/all_fasta.loc.sample @ 4:8c1cbee38ffd
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author | fangly |
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date | Tue, 04 Oct 2011 01:52:39 -0400 |
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#This file lists the locations and dbkeys of all the fasta files #under the "genome" directory (a directory that contains a directory #for each build). The script extract_fasta.py will generate the file #all_fasta.loc. #IMPORTANT: EACH LINE OF THIS FILE HAS TO BE TAB-DELIMITED! # #<unique_build_id> <dbkey> <display_name> <file_path> # #So, all_fasta.loc could look something like this: # #ncbi_refseq_complete_viruses ncbi_refseq_complete_viruses RefSeq complete viruses /path/to/ncbi_refseq_complete_viruses.fna #ncbi_refseq_complete_microbes ncbi_refseq_complete_microbes RefSeq complete microbes /path/to/ncbi_refseq_complete_microbes.fna #homo_sapiens_GRCh37 homo_sapiens_GRCh37 Homo sapiens genome /path/to/Homo_sapiens_GRCh37_reference.fna #gg_named_16S gg_named_16S GreenGenes named 16S strains /path/to/Isolated_named_strains_16S.fna