Mercurial > repos > fangly > grinder
changeset 4:8c1cbee38ffd
Uploaded
| author | fangly |
|---|---|
| date | Tue, 04 Oct 2011 01:52:39 -0400 |
| parents | 4812050c5bf9 |
| children | 5ba7c9ac056a |
| files | Galaxy_readme.txt tool-data/all_fasta.loc.sample |
| diffstat | 2 files changed, 16 insertions(+), 1 deletions(-) [+] |
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--- a/Galaxy_readme.txt Tue Oct 04 01:45:10 2011 -0400 +++ b/Galaxy_readme.txt Tue Oct 04 01:52:39 2011 -0400 @@ -1,4 +1,4 @@ -An XML wrapper that provides a GUI for Grinder in Galaxy (http://galaxy.psu.edu/) +This is an XML wrapper that provides a GUI for Grinder in Galaxy (http://galaxy.psu.edu/) Place these files in your Galaxy directory. More information at http://wiki.g2.bx.psu.edu/FrontPage.
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/all_fasta.loc.sample Tue Oct 04 01:52:39 2011 -0400 @@ -0,0 +1,15 @@ +#This file lists the locations and dbkeys of all the fasta files +#under the "genome" directory (a directory that contains a directory +#for each build). The script extract_fasta.py will generate the file +#all_fasta.loc. +#IMPORTANT: EACH LINE OF THIS FILE HAS TO BE TAB-DELIMITED! +# +#<unique_build_id> <dbkey> <display_name> <file_path> +# +#So, all_fasta.loc could look something like this: +# +#ncbi_refseq_complete_viruses ncbi_refseq_complete_viruses RefSeq complete viruses /path/to/ncbi_refseq_complete_viruses.fna +#ncbi_refseq_complete_microbes ncbi_refseq_complete_microbes RefSeq complete microbes /path/to/ncbi_refseq_complete_microbes.fna +#homo_sapiens_GRCh37 homo_sapiens_GRCh37 Homo sapiens genome /path/to/Homo_sapiens_GRCh37_reference.fna +#gg_named_16S gg_named_16S GreenGenes named 16S strains /path/to/Isolated_named_strains_16S.fna +