Mercurial > repos > fernando > protein_funcional_analysis_similarities
diff interpro/INSTALL.txt @ 0:c342ebb50f0b draft default tip
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| author | fernando |
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| date | Thu, 22 May 2014 05:09:07 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/interpro/INSTALL.txt Thu May 22 05:09:07 2014 -0400 @@ -0,0 +1,55 @@ +DEPENDENCES + +The wrapper needs BioPerl and InterProScan and it runs on a linux system. + +To install BioPerl: +http://www.bioperl.org/wiki/Installing_BioPerl + +To install InterProScan: +http://code.google.com/p/interproscan/wiki/HowToDownload + + + +## INSTALLATION WRAPPER INSTRUCTIONS + +# Stop your local Galaxy + +# Change to your_galaxy_path/tools + > cd your_galaxy_path/tools + +# Uncompress tar.gz file into "tools" directory. + > tar -xvfz interpro.tar.gz + +# Edit "paso3.sh" file and change InterProScan path to your local InterProScan path. + +# Go to the root galaxy directory, edit "tool_conf.xml" and insert this code block in the site where you would like to see the tool on the toolbar: + + <section id="LaGiFer" name="Protein Functional Analysis Similarities"> + <tool file="interpro/paso1.xml" /> + <tool file="interpro/paso2.xml" /> + <tool file="interpro/paso3.xml" /> + <tool file="interpro/paso4.xml" /> + </section> + + +# Run your Galaxy + > ./run.sh + +## INSTALLATION WORKFLOW INSTRUCTIONS + +# To install the workflow to run these tools, press "Upload or import workflow" from workflow menu, then select the .ga file through the "browse" (examinar) bottom and import it. + +Select "Configure your workflow menu" and click on "Show in menu" item and press "send". + + + +Thank you very much for using our Protein "Functional Analysis Similarities" wrapper + +For additional details or reporting errors please contact us. + + +gines.a@hotmail.com +fernando.perez8@um.es +lentram@um.es + +