Mercurial > repos > fernando > protein_funcional_analysis_similarities

DEPENDENCES

The wrapper needs BioPerl and InterProScan and it runs on a linux system.

To install BioPerl:
http://www.bioperl.org/wiki/Installing_BioPerl

To install InterProScan:
http://code.google.com/p/interproscan/wiki/HowToDownload


## INSTALLATION WRAPPER INSTRUCTIONS

# Stop your local Galaxy

# Change to your_galaxy_path/tools
	> cd your_galaxy_path/tools

# Uncompress tar.gz file into "tools" directory.
	> tar -xvfz interpro.tar.gz

# Edit "paso3.sh" file and change InterProScan path to your local InterProScan path.

# Go to the root galaxy directory, edit "tool_conf.xml" and insert this code block in the site where you would like to see the tool on the toolbar:

  <section id="LaGiFer" name="Protein Functional Analysis Similarities">
    <tool file="interpro/paso1.xml" />
    <tool file="interpro/paso2.xml" />
    <tool file="interpro/paso3.xml" />
    <tool file="interpro/paso4.xml" />
  </section>


# Run your Galaxy
	> ./run.sh

## INSTALLATION WORKFLOW INSTRUCTIONS

# To install the workflow to run these tools, press "Upload or import workflow" from workflow menu, then select the .ga file through the "browse" (examinar) bottom and import it.

Select "Configure your workflow menu" and click on "Show in menu" item and press "send".


Thank you very much for using our Protein "Functional Analysis Similarities" wrapper

For additional details or reporting errors please contact us.


gines.a@hotmail.com
fernando.perez8@um.es
lentram@um.es
author	fernando
date	Thu, 22 May 2014 05:09:07 -0400
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