Mercurial > repos > fgiacomoni > hmdb_ms_search
changeset 17:49f87ddb2c78 draft
Master branch Updating - - Fxx
| author | fgiacomoni |
|---|---|
| date | Wed, 23 Jan 2019 02:57:07 -0500 |
| parents | 8b2fbd449ffd |
| children | ec7c05889e67 |
| files | lib/hmdb.pm wsdl_hmdb.pl |
| diffstat | 2 files changed, 8 insertions(+), 5 deletions(-) [+] |
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--- a/lib/hmdb.pm Wed Jan 16 10:56:59 2019 -0500 +++ b/lib/hmdb.pm Wed Jan 23 02:57:07 2019 -0500 @@ -245,7 +245,7 @@ } else { $status_line = $res->status_line ; ($status_line) = ($status_line =~ /(\d+)/); - warn "\tHMDB service issue !! the server returned a $status_line HTTP error\n" ; + warn "\t[HMDB service issue !! the server returned a $status_line HTTP error]" ; }
--- a/wsdl_hmdb.pl Wed Jan 16 10:56:59 2019 -0500 +++ b/wsdl_hmdb.pl Wed Jan 23 02:57:07 2019 -0500 @@ -255,15 +255,16 @@ # Input : accurate mz or list of accurate masses # Author : Franck Giacomoni and Marion Landi # Email : fgiacomoni\@inra.fr -# Version : 1.5 +# Version : 1.6 # Created : 08/07/2012 -# Updated : 19/01/2018 +# Updated : 23/01/2019 - 1.6 USAGE : wsdl_hmdb.pl -mass [one mass or a string list of exact masses] -delta [mz delta] -mode [molecular species: positive|negative|neutral] -output [output tabular file] -view [output html file] or wsdl_hmdb.pl -masses [an input file of mzs] -colfactor [col of mz] -header_choice [yes|no] -nblineheader [nb of lines containing file header : 0-n] - -delta [mz delta] -mode [molecular species: positive|negative|neutral] -output [output tabular file] -view [output html file] + -delta [mz delta] -mode [molecular species: positive|negative|neutral] -output [output tabular file] -view [output html file] + -advancedFeatures [Default 0, set to 1 for advanced features as logp, inchi, ...] or wsdl_hmdb.pl -h for help @@ -322,6 +323,8 @@ version 1.4 : 21 / 01 / 2016 - a clean version for community -version 1.5 : 19 / 01 / 2018 - modifiy parser to match HMDB V4.0 formats +version 1.5 : 19 / 01 / 2018 - modify parser to match HMDB V4.0 formats + +version 1.6 : 23 / 01 / 2019 - Manage UA http error and advanced feature from hmdb. =cut \ No newline at end of file