Mercurial > repos > fgiacomoni > lipidmaps_textsearch

comparison README.md @ 0:e8bd49794291 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Init repository with last lipidmaps_textsearch master version
author fgiacomoni
date Tue, 11 Apr 2017 03:47:06 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:e8bd49794291
1 LipidMaps - Search on LM online with masses.
2 ============================================
3
4 [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) [![Build Status](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps)
5
6 Our project
7 -----------
8 The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
9
10
11 LipidMaps - Search on LM online with masses.
12 --------------------------------------------
13
14 Tool using the [LIPID MAPS Structure Database](http://www.lipidmaps.org/data/structure/index.html) or LMSD, and its Text/Ontology-based search engine.
15
16
17 Galaxy
18 ------
19 Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
20
21 Homepage: [https://galaxyproject.org/](https://galaxyproject.org/)
22
23
24 Dependencies using Conda
25 ------------------------
26 [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io)
27
28
29 [Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages.
30
31 ```
32 #To install miniconda2
33 #http://conda.pydata.org/miniconda.html
34 #To install the tool dependencies using conda:
35 conda install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template
36 #To set an environment:
37 conda create -n wrapper-bank-massbank-spectrum_search perl-soap-lite perl-list-moreutils perl-json perl-html-template`
38 #To activate the environment:
39 . activate wrapper-bank-massbank-spectrum_search
40 ```
41
42
43 Travis
44 ------
45 [![Build Status](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/tool-bank-lipidmaps)
46
47 Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!
48
49 Historic contributors
50 ---------------------
51 - Franck Giacomoni @fgiacomoni - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme)
52 - Marion Landi - [LIFEGRID grant](http://www.lifegrid.fr/fr/home/le-pra-lifegrid.html) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme)