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Init repository with last massbank_ws_searchspectrum master version
author fgiacomoni
date Wed, 19 Apr 2017 11:31:58 -0400
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1 MassBank spectrum searches - Search by pseudo-spectra on a High Quality Mass Spectral Database.
2 ===============================================================================================
3
4 [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) [![Build Status](https://travis-ci.org/workflow4metabolomics/wrapper-bank-massbank-spectrum_search.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/wrapper-bank-massbank-spectrum_search)
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6 Our project
7 -----------
8 The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
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11 MassBank spectrum searches - Search by pseudo-spectra on a High Quality Mass Spectral Database.
12 -----------------------------------------------------------------------------------------------
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14 Tool using the MassBank API Spectrum Search.
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17 Galaxy
18 ------
19 Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
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21 Homepage: [https://galaxyproject.org/](https://galaxyproject.org/)
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24 Dependencies using Conda
25 ------------------------
26 [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io)
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29 [Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages.
30
31 ```
32 #To install miniconda2
33 #http://conda.pydata.org/miniconda.html
34 #To install the tool dependencies using conda:
35 conda install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template
36 #To set an environment:
37 conda create -n wrapper-bank-massbank-spectrum_search perl-soap-lite perl-list-moreutils perl-json perl-html-template`
38 #To activate the environment:
39 . activate wrapper-bank-massbank-spectrum_search
40 ```
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42
43 Travis
44 ------
45 [![Build Status](https://travis-ci.org/workflow4metabolomics/wrapper-bank-massbank-spectrum_search.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/wrapper-bank-massbank-spectrum_search)
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47 Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!
48
49 Historic contributors
50 ---------------------
51 - Franck Giacomoni @fgiacomoni - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme)
52 - Marion Landi - [LIFEGRID grant](http://www.lifegrid.fr/fr/home/le-pra-lifegrid.html) - [La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)](http://www6.clermont.inra.fr/plateforme_exploration_metabolisme)
53 - Yann Guitton @yguitton - [LABERCA - Laboratory of Food Contaminants and Residue Analysis](http://www.laberca.org/) - Ecole Nationale Vétérinaire, Agroalimentaire et de l'Alimentation Nantes-Atlantique - France