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1 <?xml version="1.0" ?>
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2 <tool id="qiime_feature-table_merge-taxa" name="qiime feature-table merge-taxa"
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3 version="2020.8">
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4 <description>Combine collections of feature taxonomies</description>
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5 <requirements>
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6 <requirement type="package" version="2020.8">qiime2</requirement>
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7 </requirements>
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8 <command><![CDATA[
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9 qiime feature-table merge-taxa
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10 # if $input_files_idata:
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11 # def list_dict_to_string(list_dict):
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12 # set $file_list = list_dict[0]['additional_input'].__getattr__('file_name')
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13 # for d in list_dict[1:]:
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14 # set $file_list = $file_list + ' --i-data=' + d['additional_input'].__getattr__('file_name')
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15 # end for
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16 # return $file_list
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17 # end def
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18 --i-data=$list_dict_to_string($input_files_idata)
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19 # end if
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20
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21 --o-merged-data=omergeddata
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22
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23 #if str($examples) != 'None':
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24 --examples=$examples
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25 #end if
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26
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27 ;
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28 cp omergeddata.qza $omergeddata
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29
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30 ]]></command>
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31 <inputs>
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32 <repeat name="input_files_idata" optional="False" title="--i-data">
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33 <param format="qza,no_unzip.zip" label="--i-data: ARTIFACTS... List[FeatureData[Taxonomy]] The collection of feature taxonomies to be merged. [required]" name="additional_input" optional="False" type="data" />
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34 </repeat>
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35 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
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36
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37 </inputs>
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38
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39 <outputs>
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40 <data format="qza" label="${tool.name} on ${on_string}: mergeddata.qza" name="omergeddata" />
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41
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42 </outputs>
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43
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44 <help><![CDATA[
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45 Combine collections of feature taxonomies
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46 ###############################################################
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47
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48 Combines a pair of feature data objects which may or may not contain data
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49 for the same features. If different feature data is present for the same
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50 feature id in the inputs, the data from the first will be propagated to the
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51 result.
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52
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53 Parameters
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54 ----------
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55 data : List[FeatureData[Taxonomy]]
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56 The collection of feature taxonomies to be merged.
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57
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58 Returns
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59 -------
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60 merged_data : FeatureData[Taxonomy]
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61 The resulting collection of feature taxonomies containing all feature
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62 taxonomies provided.
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63 ]]></help>
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64 <macros>
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65 <import>qiime_citation.xml</import>
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66 </macros>
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67 <expand macro="qiime_citation"/>
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68 </tool> |
