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1 <?xml version="1.0" ?>
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2 <tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root"
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3 version="2020.8">
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4 <description>Midpoint root an unrooted phylogenetic tree.</description>
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5 <requirements>
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6 <requirement type="package" version="2020.8">qiime2</requirement>
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7 </requirements>
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8 <command><![CDATA[
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9 qiime phylogeny midpoint-root
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10
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11 --i-tree=$itree
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12
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13 --o-rooted-tree=orootedtree
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14
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15 #if str($examples) != 'None':
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16 --examples=$examples
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17 #end if
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18
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19 ;
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20 cp orootedtree.qza $orootedtree
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21
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22 ]]></command>
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23 <inputs>
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24 <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted. [required]" name="itree" optional="False" type="data" />
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25 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
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26
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27 </inputs>
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28
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29 <outputs>
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30 <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree" />
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31
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32 </outputs>
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33
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34 <help><![CDATA[
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35 Midpoint root an unrooted phylogenetic tree.
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36 ###############################################################
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37
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38 Midpoint root an unrooted phylogenetic tree.
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39
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40 Parameters
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41 ----------
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42 tree : Phylogeny[Unrooted]
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43 The phylogenetic tree to be rooted.
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44
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45 Returns
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46 -------
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47 rooted_tree : Phylogeny[Rooted]
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48 The rooted phylogenetic tree.
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49 ]]></help>
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50 <macros>
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51 <import>qiime_citation.xml</import>
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52 </macros>
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53 <expand macro="qiime_citation"/>
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54 </tool> |
