diff qiime2-2020.8/qiime_phylogeny_midpoint-root.xml @ 20:d93d8888f0b0 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2-2020.8/qiime_phylogeny_midpoint-root.xml	Fri Sep 04 12:44:24 2020 +0000
@@ -0,0 +1,54 @@
+<?xml version="1.0" ?>
+<tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root"
+      version="2020.8">
+  <description>Midpoint root an unrooted phylogenetic tree.</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime phylogeny midpoint-root
+
+--i-tree=$itree
+
+--o-rooted-tree=orootedtree
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp orootedtree.qza $orootedtree
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted.          [required]" name="itree" optional="False" type="data" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree" />
+    
+  </outputs>
+
+  <help><![CDATA[
+Midpoint root an unrooted phylogenetic tree.
+###############################################################
+
+Midpoint root an unrooted phylogenetic tree.
+
+Parameters
+----------
+tree : Phylogeny[Unrooted]
+    The phylogenetic tree to be rooted.
+
+Returns
+-------
+rooted_tree : Phylogeny[Rooted]
+    The rooted phylogenetic tree.
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
\ No newline at end of file