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1 <?xml version="1.0" ?>
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2 <tool id="qiime_phylogeny_filter-table" name="qiime phylogeny filter-table" version="2019.4">
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3 <description> - Remove features from table if they're not present in tree.</description>
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4 <requirements>
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5 <requirement type="package" version="2019.4">qiime2</requirement>
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6 </requirements>
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7 <command><![CDATA[
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8 qiime phylogeny filter-table
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9
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10 --i-table=$itable
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11 --i-tree=$itree
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12
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13 --o-filtered-table=ofilteredtable
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14 ;
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15 cp ofilteredtable.qza $ofilteredtable
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16 ]]></command>
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17 <inputs>
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18 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] Feature table that features should be filtered from. [required]" name="itable" optional="False" type="data"/>
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19 <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Rooted | Unrooted] Tree where tip identifiers are the feature identifiers that should be retained in the table. [required]" name="itree" optional="False" type="data"/>
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20 </inputs>
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21 <outputs>
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22 <data format="qza" label="${tool.name} on ${on_string}: filteredtable.qza" name="ofilteredtable"/>
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23 </outputs>
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24 <help><![CDATA[
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25 Remove features from table if they're not present in tree.
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26 ##########################################################
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27
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28 Remove features from a feature table if their identifiers are not tip
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29 identifiers in tree.
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30
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31 Parameters
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32 ----------
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33 table : FeatureTable[Frequency]
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34 Feature table that features should be filtered from.
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35 tree : Phylogeny[Rooted | Unrooted]
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36 Tree where tip identifiers are the feature identifiers that should be
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37 retained in the table.
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38
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39 Returns
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40 -------
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41 filtered_table : FeatureTable[Frequency]
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42 The resulting feature table.
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43 ]]></help>
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44 <macros>
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45 <import>qiime_citation.xml</import>
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46 </macros>
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47 <expand macro="qiime_citation"/>
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48 </tool>
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