Mercurial > repos > florianbegusch > qiime2_suite

<?xml version="1.0" ?>
<tool id="qiime_phylogeny_filter-table" name="qiime phylogeny filter-table" version="2019.4">
	<description> - Remove features from table if they're not present in tree.</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
qiime phylogeny filter-table

--i-table=$itable
--i-tree=$itree

--o-filtered-table=ofilteredtable
;
cp ofilteredtable.qza $ofilteredtable
	]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] Feature table that features should be filtered from. [required]" name="itable" optional="False" type="data"/>
		<param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Rooted | Unrooted] Tree where tip identifiers are the feature identifiers that should be retained in the table.        [required]" name="itree" optional="False" type="data"/>
	</inputs>
	<outputs>
		<data format="qza" label="${tool.name} on ${on_string}: filteredtable.qza" name="ofilteredtable"/>
	</outputs>
	<help><![CDATA[
Remove features from table if they're not present in tree.
##########################################################

Remove features from a feature table if their identifiers are not tip
identifiers in tree.

Parameters
----------
table : FeatureTable[Frequency]
    Feature table that features should be filtered from.
tree : Phylogeny[Rooted | Unrooted]
    Tree where tip identifiers are the feature identifiers that should be
    retained in the table.

Returns
-------
filtered_table : FeatureTable[Frequency]
    The resulting feature table.
	]]></help>
<macros>
    <import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation"/>
</tool>
author	florianbegusch
date	Tue, 13 Aug 2019 07:57:53 -0400
parents	370e0b6e9826
children	f190567fe3f6