annotate qiime2-2020.8/qiime_feature-table_presence-absence.xml @ 20:d93d8888f0b0 draft

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<?xml version="1.0" ?>
<tool id="qiime_feature-table_presence-absence" name="qiime feature-table presence-absence"
      version="2020.8">
  <description>Convert to presence/absence</description>
  <requirements>
    <requirement type="package" version="2020.8">qiime2</requirement>
  </requirements>
  <command><![CDATA[
qiime feature-table presence-absence

#if $itable:
 --i-table
#end if

#if $opresenceabsencetable:
 --o-presence-absence-table
#end if

#if str($examples) != 'None':
--examples=$examples
#end if

;
cp omergeddata.qza $omergeddata

  ]]></command>
  <inputs>
    <param format="qza,no_unzip.zip" label="--i-table: --i-table: ARTIFACT FeatureTable[Frequency | RelativeFrequency] The feature table to be converted into presence/absence abundances.                 [required]" name="itable" selected="False" type="boolean" />
    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
    
  </inputs>

  <outputs>
    <param label="--o-presence-absence-table: --o-presence-absence-table: ARTIFACT FeatureTable[PresenceAbsence] The resulting presence/absence feature table. [required]" name="opresenceabsencetable" selected="False" type="boolean" />
    
  </outputs>

  <help><![CDATA[
Convert to presence/absence
###############################################################

Convert frequencies to binary values indicating presence or absence of a
feature in a sample.

Parameters
----------
table : FeatureTable[Frequency | RelativeFrequency]
    The feature table to be converted into presence/absence abundances.

Returns
-------
presence_absence_table : FeatureTable[PresenceAbsence]
    The resulting presence/absence feature table.
  ]]></help>
  <macros>
    <import>qiime_citation.xml</import>
  </macros>
  <expand macro="qiime_citation"/>
</tool>