annotate qiime2-2020.8/qiime_tools_export_collection.xml @ 20:d93d8888f0b0 draft

Uploaded
author florianbegusch
date Fri, 04 Sep 2020 12:44:24 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
20
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
1 <?xml version="1.0" encoding="UTF-8"?>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
2 <tool id="qiime_tools_export_collection" name="qiime tools export --input-path collection" version="2020.8">
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
3 <description>- Export data from a QIIME 2 Artifact or Visualization.</description>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
4 <requirements>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
5 <requirement type="package" version="2020.8">qiime2</requirement>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
6 </requirements>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
7 <command><![CDATA[qiime tools export --input-path $isequences --output-path test && cd test && gunzip *]]></command>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
8 <inputs>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
9 <param format="qza,no_unzip.zip" label="Input artifact to export! [required]" name="isequences" optional="False" type="data" />
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
10 </inputs>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
11
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
12 <outputs>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
13 <collection type="list" label="Export artifact to collection" name="output">
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
14 <discover_datasets pattern="__designation_and_ext__" directory="test" />
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
15 </collection>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
16 </outputs>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
17 <help />
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
18 <macros>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
19 <import>qiime_citation.xml</import>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
20 </macros>
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
21 <expand macro="qiime_citation" />
d93d8888f0b0 Uploaded
florianbegusch
parents:
diff changeset
22 </tool>