comparison qiime2/qiime_feature-table_tabulate-seqs.xml @ 0:370e0b6e9826 draft

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0:370e0b6e9826

<?xml version="1.0" ?>
<tool id="qiime_feature-table_tabulate-seqs" name="qiime feature-table tabulate-seqs" version="2019.4">
	<description> - View sequence associated with each feature</description>
	<requirements>
		<requirement type="package" version="2019.4">qiime2</requirement>
	</requirements>
	<command><![CDATA[
qiime feature-table tabulate-seqs

--i-data=$idata

--o-visualization=ovisualization
;
qiime tools export --input-path ovisualization.qzv --output-path out   && mkdir -p '$ovisualization.files_path'
&& cp -r out/* '$ovisualization.files_path'
&& mv '$ovisualization.files_path/index.html' '$ovisualization';
	]]></command>
	<inputs>
		<param format="qza,no_unzip.zip" label="--i-data: ARTIFACT FeatureData[Sequence] The feature sequences to be tabulated.       [required]" name="idata" optional="False" type="data"/>
	</inputs>
	<outputs>
		<data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/>
	</outputs>
	<help><![CDATA[
View sequence associated with each feature
##########################################

Generate tabular view of feature identifier to sequence mapping, including
links to BLAST each sequence against the NCBI nt database.

Parameters
----------
data : FeatureData[Sequence]
    The feature sequences to be tabulated.

Returns
-------
visualization : Visualization
	]]></help>
<macros>
    <import>qiime_citation.xml</import>
</macros>
<expand macro="qiime_citation"/>
</tool>