Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2/qiime_sample-classifier_summarize.xml @ 14:a0a8d77a991c draft
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author | florianbegusch |
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date | Thu, 03 Sep 2020 09:51:29 +0000 |
parents | f190567fe3f6 |
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13:887cd4ad8e16 | 14:a0a8d77a991c |
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1 <?xml version="1.0" ?> | 1 <?xml version="1.0" ?> |
2 <tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize" version="2019.7"> | 2 <tool id="qiime_sample-classifier_summarize" name="qiime sample-classifier summarize" |
3 <description> - Summarize parameter and feature extraction information for a trained estimator.</description> | 3 version="2020.8"> |
4 <requirements> | 4 <description>Summarize parameter and feature extraction information for a trained estimator.</description> |
5 <requirement type="package" version="2019.7">qiime2</requirement> | 5 <requirements> |
6 </requirements> | 6 <requirement type="package" version="2020.8">qiime2</requirement> |
7 <command><![CDATA[ | 7 </requirements> |
8 qiime sample-classifier summarize | 8 <command><![CDATA[ |
9 qiime sample-classifier summarize | |
9 | 10 |
10 --i-sample-estimator=$isampleestimator | 11 --i-sample-estimator=$isampleestimator |
11 | 12 |
12 --o-visualization=ovisualization | 13 --o-visualization=ovisualization |
14 | |
15 #if str($examples) != 'None': | |
16 --examples=$examples | |
17 #end if | |
18 | |
13 ; | 19 ; |
14 qiime tools export --input-path ovisualization.qzv --output-path out && mkdir -p '$ovisualization.files_path' | 20 cp otesttable.qza $otesttable |
21 | |
22 ; | |
23 qiime tools export ovisualization.qzv --output-path out | |
24 && mkdir -p '$ovisualization.files_path' | |
15 && cp -r out/* '$ovisualization.files_path' | 25 && cp -r out/* '$ovisualization.files_path' |
16 && mv '$ovisualization.files_path/index.html' '$ovisualization' | 26 && mv '$ovisualization.files_path/index.html' '$ovisualization' |
17 ]]></command> | 27 |
18 <inputs> | 28 ]]></command> |
19 <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor. [required]" name="isampleestimator" optional="False" type="data"/> | 29 <inputs> |
20 </inputs> | 30 <param format="qza,no_unzip.zip" label="--i-sample-estimator: ARTIFACT SampleEstimator[Classifier | Regressor] Sample estimator trained with fit_classifier or fit_regressor. [required]" name="isampleestimator" optional="False" type="data" /> |
21 <outputs> | 31 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> |
22 <data format="html" label="${tool.name} on ${on_string}: visualization.qzv" name="ovisualization"/> | 32 |
23 </outputs> | 33 </inputs> |
24 <help><![CDATA[ | 34 |
35 <outputs> | |
36 <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" /> | |
37 | |
38 </outputs> | |
39 | |
40 <help><![CDATA[ | |
25 Summarize parameter and feature extraction information for a trained estimator. | 41 Summarize parameter and feature extraction information for a trained estimator. |
26 ############################################################################### | 42 ############################################################### |
43 | |
27 | 44 |
28 Summarize parameter and feature extraction information for a trained | 45 Summarize parameter and feature extraction information for a trained |
29 estimator. | 46 estimator. |
30 | 47 |
31 Parameters | 48 Parameters |
34 Sample estimator trained with fit_classifier or fit_regressor. | 51 Sample estimator trained with fit_classifier or fit_regressor. |
35 | 52 |
36 Returns | 53 Returns |
37 ------- | 54 ------- |
38 visualization : Visualization | 55 visualization : Visualization |
39 ]]></help> | 56 ]]></help> |
40 <macros> | 57 <macros> |
41 <import>qiime_citation.xml</import> | 58 <import>qiime_citation.xml</import> |
42 </macros> | 59 </macros> |
43 <expand macro="qiime_citation"/> | 60 <expand macro="qiime_citation"/> |
44 </tool> | 61 </tool> |