Mercurial > repos > florianbegusch > qiime2_suite
comparison qiime2-2020.8/qiime_phylogeny_filter-table.xml @ 20:d93d8888f0b0 draft
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author | florianbegusch |
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date | Fri, 04 Sep 2020 12:44:24 +0000 |
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19:6c48f8d82424 | 20:d93d8888f0b0 |
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1 <?xml version="1.0" ?> | |
2 <tool id="qiime_phylogeny_filter-table" name="qiime phylogeny filter-table" | |
3 version="2020.8"> | |
4 <description>Remove features from table if they\'re not present in tree.</description> | |
5 <requirements> | |
6 <requirement type="package" version="2020.8">qiime2</requirement> | |
7 </requirements> | |
8 <command><![CDATA[ | |
9 qiime phylogeny filter-table | |
10 | |
11 --i-table=$itable | |
12 | |
13 --i-tree=$itree | |
14 | |
15 --o-filtered-table=ofilteredtable | |
16 | |
17 #if str($examples) != 'None': | |
18 --examples=$examples | |
19 #end if | |
20 | |
21 ; | |
22 cp ofilteredtable.qza $ofilteredtable | |
23 | |
24 ]]></command> | |
25 <inputs> | |
26 <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] Feature table that features should be filtered from. [required]" name="itable" optional="False" type="data" /> | |
27 <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Rooted | Unrooted] Tree where tip identifiers are the feature identifiers that should be retained in the table. [required]" name="itree" optional="False" type="data" /> | |
28 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" /> | |
29 | |
30 </inputs> | |
31 | |
32 <outputs> | |
33 <data format="qza" label="${tool.name} on ${on_string}: filteredtable.qza" name="ofilteredtable" /> | |
34 | |
35 </outputs> | |
36 | |
37 <help><![CDATA[ | |
38 Remove features from table if they\'re not present in tree. | |
39 ############################################################### | |
40 | |
41 Remove features from a feature table if their identifiers are not tip | |
42 identifiers in tree. | |
43 | |
44 Parameters | |
45 ---------- | |
46 table : FeatureTable[Frequency] | |
47 Feature table that features should be filtered from. | |
48 tree : Phylogeny[Rooted | Unrooted] | |
49 Tree where tip identifiers are the feature identifiers that should be | |
50 retained in the table. | |
51 | |
52 Returns | |
53 ------- | |
54 filtered_table : FeatureTable[Frequency] | |
55 The resulting feature table. | |
56 ]]></help> | |
57 <macros> | |
58 <import>qiime_citation.xml</import> | |
59 </macros> | |
60 <expand macro="qiime_citation"/> | |
61 </tool> |