diff qiime2-2020.8/qiime_phylogeny_filter-table.xml @ 20:d93d8888f0b0 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2-2020.8/qiime_phylogeny_filter-table.xml	Fri Sep 04 12:44:24 2020 +0000
@@ -0,0 +1,61 @@
+<?xml version="1.0" ?>
+<tool id="qiime_phylogeny_filter-table" name="qiime phylogeny filter-table"
+      version="2020.8">
+  <description>Remove features from table if they\'re not present in tree.</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime phylogeny filter-table
+
+--i-table=$itable
+
+--i-tree=$itree
+
+--o-filtered-table=ofilteredtable
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp ofilteredtable.qza $ofilteredtable
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-table: ARTIFACT FeatureTable[Frequency] Feature table that features should be filtered from. [required]" name="itable" optional="False" type="data" />
+    <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Rooted | Unrooted] Tree where tip identifiers are the feature identifiers that should be retained in the table.        [required]" name="itree" optional="False" type="data" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="qza" label="${tool.name} on ${on_string}: filteredtable.qza" name="ofilteredtable" />
+    
+  </outputs>
+
+  <help><![CDATA[
+Remove features from table if they\'re not present in tree.
+###############################################################
+
+Remove features from a feature table if their identifiers are not tip
+identifiers in tree.
+
+Parameters
+----------
+table : FeatureTable[Frequency]
+    Feature table that features should be filtered from.
+tree : Phylogeny[Rooted | Unrooted]
+    Tree where tip identifiers are the feature identifiers that should be
+    retained in the table.
+
+Returns
+-------
+filtered_table : FeatureTable[Frequency]
+    The resulting feature table.
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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