comparison qiime2-2020.8/qiime_phylogeny_midpoint-root.xml @ 20:d93d8888f0b0 draft

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20:d93d8888f0b0

<?xml version="1.0" ?>
<tool id="qiime_phylogeny_midpoint-root" name="qiime phylogeny midpoint-root"
      version="2020.8">
  <description>Midpoint root an unrooted phylogenetic tree.</description>
  <requirements>
    <requirement type="package" version="2020.8">qiime2</requirement>
  </requirements>
  <command><![CDATA[
qiime phylogeny midpoint-root

--i-tree=$itree

--o-rooted-tree=orootedtree

#if str($examples) != 'None':
--examples=$examples
#end if

;
cp orootedtree.qza $orootedtree

  ]]></command>
  <inputs>
    <param format="qza,no_unzip.zip" label="--i-tree: ARTIFACT Phylogeny[Unrooted] The phylogenetic tree to be rooted.          [required]" name="itree" optional="False" type="data" />
    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
    
  </inputs>

  <outputs>
    <data format="qza" label="${tool.name} on ${on_string}: rootedtree.qza" name="orootedtree" />
    
  </outputs>

  <help><![CDATA[
Midpoint root an unrooted phylogenetic tree.
###############################################################

Midpoint root an unrooted phylogenetic tree.

Parameters
----------
tree : Phylogeny[Unrooted]
    The phylogenetic tree to be rooted.

Returns
-------
rooted_tree : Phylogeny[Rooted]
    The rooted phylogenetic tree.
  ]]></help>
  <macros>
    <import>qiime_citation.xml</import>
  </macros>
  <expand macro="qiime_citation"/>
</tool>