diff qiime2/qiime_deblur_visualize-stats.xml @ 29:3ba9833030c1 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2/qiime_deblur_visualize-stats.xml	Fri Sep 04 13:12:49 2020 +0000
@@ -0,0 +1,59 @@
+<?xml version="1.0" ?>
+<tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats"
+      version="2020.8">
+  <description>Visualize Deblur stats per sample.</description>
+  <requirements>
+    <requirement type="package" version="2020.8">qiime2</requirement>
+  </requirements>
+  <command><![CDATA[
+qiime deblur visualize-stats
+
+--i-deblur-stats=$ideblurstats
+
+--o-visualization=ovisualization
+
+#if str($examples) != 'None':
+--examples=$examples
+#end if
+
+;
+cp ostats.qza $ostats
+
+;
+qiime tools export  ovisualization.qzv --output-path out
+&& mkdir -p '$ovisualization.files_path'
+&& cp -r out/* '$ovisualization.files_path'
+&& mv '$ovisualization.files_path/index.html' '$ovisualization'
+
+  ]]></command>
+  <inputs>
+    <param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats        Summary statistics of the Deblur process.    [required]" name="ideblurstats" optional="False" type="data" />
+    <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
+    
+  </inputs>
+
+  <outputs>
+    <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
+    
+  </outputs>
+
+  <help><![CDATA[
+Visualize Deblur stats per sample.
+###############################################################
+
+Display Deblur statistics per sample
+
+Parameters
+----------
+deblur_stats : DeblurStats
+    Summary statistics of the Deblur process.
+
+Returns
+-------
+visualization : Visualization
+  ]]></help>
+  <macros>
+    <import>qiime_citation.xml</import>
+  </macros>
+  <expand macro="qiime_citation"/>
+</tool>
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