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1 <?xml version="1.0" ?>
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2 <tool id="qiime_deblur_visualize-stats" name="qiime deblur visualize-stats"
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3 version="2020.8">
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4 <description>Visualize Deblur stats per sample.</description>
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5 <requirements>
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6 <requirement type="package" version="2020.8">qiime2</requirement>
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7 </requirements>
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8 <command><![CDATA[
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9 qiime deblur visualize-stats
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10
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11 --i-deblur-stats=$ideblurstats
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12
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13 --o-visualization=ovisualization
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14
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15 #if str($examples) != 'None':
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16 --examples=$examples
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17 #end if
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18
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19 ;
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20 cp ostats.qza $ostats
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21
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22 ;
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23 qiime tools export ovisualization.qzv --output-path out
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24 && mkdir -p '$ovisualization.files_path'
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25 && cp -r out/* '$ovisualization.files_path'
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26 && mv '$ovisualization.files_path/index.html' '$ovisualization'
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27
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28 ]]></command>
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29 <inputs>
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30 <param format="qza,no_unzip.zip" label="--i-deblur-stats: ARTIFACT DeblurStats Summary statistics of the Deblur process. [required]" name="ideblurstats" optional="False" type="data" />
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31 <param label="--examples: Show usage examples and exit." name="examples" optional="False" type="data" />
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32
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33 </inputs>
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34
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35 <outputs>
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36 <data format="html" label="${tool.name} on ${on_string}: visualization.html" name="ovisualization" />
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37
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38 </outputs>
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39
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40 <help><![CDATA[
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41 Visualize Deblur stats per sample.
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42 ###############################################################
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43
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44 Display Deblur statistics per sample
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45
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46 Parameters
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47 ----------
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48 deblur_stats : DeblurStats
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49 Summary statistics of the Deblur process.
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50
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51 Returns
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52 -------
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53 visualization : Visualization
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54 ]]></help>
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55 <macros>
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56 <import>qiime_citation.xml</import>
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57 </macros>
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58 <expand macro="qiime_citation"/>
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59 </tool> |
