frogs_2_0_0: test-data/references/01-prepro.html annotate

author	frogs
date	Thu, 25 Oct 2018 05:01:13 -0400
parents
children

rev	line source
0 76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	1 <!DOCTYPE html>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	2 <!--
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	3 # Copyright (C) 2015 INRA
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	4 #
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	5 # This program is free software: you can redistribute it and/or modify
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	6 # it under the terms of the GNU General Public License as published by
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	7 # the Free Software Foundation, either version 3 of the License, or
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	8 # (at your option) any later version.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	9 #
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	10 # This program is distributed in the hope that it will be useful,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	11 # but WITHOUT ANY WARRANTY; without even the implied warranty of
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	13 # GNU General Public License for more details.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	14 #
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	15 # You should have received a copy of the GNU General Public License
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	16 # along with this program. If not, see <http://www.gnu.org/licenses/>.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	17 -->
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	18 <html>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	19 <head>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	20 <title>FROGS Pre-process</title>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	21 <meta charset="UTF-8">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	22 <meta name="version" content="1.2.1">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	23 <!-- CSS -->
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	24 <link rel="stylesheet" href="https://cdn.datatables.net/1.10.6/css/jquery.dataTables.css"></link>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	25 <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/css/bootstrap.min.css"></link>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	26 <style type="text/css">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	27 #js-alert {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	28 width: 90%;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	29 margin-right: auto;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	30 margin-left: auto;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	31 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	32 #content {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	33 width: 90%;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	34 margin-right: auto;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	35 margin-left: auto;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	36 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	37 .clear {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	38 clear: both;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	39 height: 0px;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	40 width: 100%;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	41 float: none !important;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	42 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	43 </style>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	44 <!-- JS -->
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	45 <script type="text/javascript" src="http://code.jquery.com/jquery-2.1.3.min.js"></script>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	46 <script type="text/javascript" src="http://code.highcharts.com/4.1.4/highcharts.js"></script>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	47 <script type="text/javascript" src="http://code.highcharts.com/4.1.4/modules/exporting.js"></script>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	48 <script type="text/javascript" src="https://cdn.datatables.net/1.10.6/js/jquery.dataTables.min.js"></script>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	49 <script type="text/javascript" src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/js/bootstrap.min.js"></script>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	50 <script type="text/javascript">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	51 /*
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	52 * HTMLTable.js 0.1.0 - HTMLTable Library
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	53 *
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	54 * Copyright (c) 2015 Escudie Frederic
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	55 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	56 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	57 function HTMLtable(e){var t,r,n=e,a=";";this.deleteColumns=function(e){for(var a=n.getElementsByTagName("tr"),o=0;o<a.length;o++){s=0;var i=a[o].getElementsByTagName("td");0==i.length&&(i=a[o].getElementsByTagName("th"));for(var v=0,s=0;s<t[1];s++)if(!r[o][s]){var f=i[v].getAttribute("colspan");if(null!=f)for(var m=0;f>m;m++){if(in_array(s+m,e)){var u=i[v].getAttribute("colspan");u-1==0?i[v].removeAttribute("colspan"):i[v].setAttribute("colspan",u-1)}if(null==i[v].getAttribute("colspan")){var h=i[v];a[o].removeChild(h),v--}}else if(in_array(s,e)){var h=i[v];a[o].removeChild(h),v--}v++}}l(),g()},this.filter=function(e,a){var l=new RegExp(e),g=new Array;null!=a&&a\|\|(g.c0=!0);for(var o=n.getElementsByTagName("tr"),i=0;i<o.length;i++){f=0;var v=o[i].getElementsByTagName("td");if(0!=v.length)for(var s=0,f=0;f<t[1];f++)r[i][f]\|\|(l.test(v[s].innerHTML)&&(g["c"+f]=!0),s++)}for(var m=new Array,u=0;u<t[1];u++)void 0===g["c"+u]&&m.push(u);this.deleteColumns(m)},this.getModel=function(){return n};var l=function(){for(var e=0,r=0,a=n.getElementsByTagName("tr"),l=0;l<a.length;l++){var g=0;e++;var o=a[l].getElementsByTagName("td");0==o.length&&(o=a[l].getElementsByTagName("th"));for(var i=0;i<o.length;i++){var v=o[i].getAttribute("colspan");g+=null==v?1:parseInt(v)}g>r&&(r=g)}t=new Array(2),t[0]=e,t[1]=r},g=function(){r=new Array(t[0]);for(var e=0;e<t[0];e++){r[e]=new Array(t[1]);for(var a=0;a<t[1];a++)r[e][a]=!1}for(var l=n.getElementsByTagName("tr"),g=0;g<l.length;g++){v=0;var o=l[g].getElementsByTagName("td");0==o.length&&(o=l[g].getElementsByTagName("th"));for(var i=0,v=0;v<t[1];v++)if(!r[g][v]){var s=0,f=0,m=o[i].getAttribute("rowspan");null!=m&&(s=parseInt(m)-1);var u=o[i].getAttribute("colspan");null!=u&&(f=parseInt(u)-1);for(var h=s;h>=0;h--)for(var y=f;y>=0;y--)(0!=h\|\|0!=y)&&(r[g+h][v+y]=!0);i++}}};this.replace=function(e,a,l){var g=new RegExp(e);null==a&&(a=""),null==l&&(l="");for(var o=n.getElementsByTagName("tr"),i=0;i<o.length;i++){f=0;var v=o[i].getElementsByTagName("td");if(0!=v.length)for(var s=0,f=0;f<t[1];f++)if(!r[i][f]){var m=g.exec(v[s].innerHTML);null!=m&&(void 0===m[1]&&(m[1]=""),v[s].innerHTML=a+m[1]+l),s++}}},this.toCSV=function(){for(var e="",l=n.getElementsByTagName("tr"),g=0;g<l.length;g++){var o=l[g].getElementsByTagName("td");0==o.length&&(o=l[g].getElementsByTagName("th"));for(var i=0,v=0;v<t[1];v++)r[g][v]\|\|(e+=o[i].innerHTML,i++),e+=a;e=e.substr(0,e.length-1)+"\n"}return e},l(),g()}var in_array=function(e,t){for(var r in t)if(t[r]==e)return!0;return!1};
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	58
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	59 /*
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	60 * dataTableExtractor.plugin.js 0.1.0 - datatableExport Library
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	61 *
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	62 * Copyright (c) 2015 Escudie Frederic
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	63 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	64 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	65 !function(t){t.fn.datatableExport=function(a){var e={anchor_id:t(this).attr("id"),table_id:null,csv_separator:";",omitted_columns:[]},n=t.extend(e,a);if(!t(this).length)throw"The element where the datatableExport is called does not exist.";if(void 0==n.anchor_id)throw"The datatableExport plugin must be called on an element with id.";if(null==n.table_id)throw"You must set the table_id parameter in datatableExport plugin.";if(!t("#"+n.table_id))throw"The datatable '#"+n.table_id+"' cannot be retieve in DOM.";return this.each(function(){var a=t(this);a.on("click",function(){t.fn.datatableExport.csv(n.anchor_id,n.table_id,n.csv_separator,n.omitted_columns)})})},t.fn.datatableExport.cleanCellMarkup=function(a,e){t.parseHTML(e);t("#"+a).append('<div class="hidden data-tmp">'+e+"</div>"),t("#"+a+" .data-tmp").find("input").each(function(){var a="";a=t(this).is(":checkbox")?t(this).is(":checked")?"true":"false":t(this).val(),t(this).replaceWith(a)});var n=t("#"+a+" .data-tmp").text();return t("#"+a+" .data-tmp").remove(),n},t.fn.datatableExport.csv=function(a,e,n,i){var l="",r=t("#"+e).DataTable(),d=t("#"+e+" thead")[0],o=new HTMLtable(d.cloneNode(!0));o.deleteColumns(i),l+=o.toCSV();var c=r.rows().data();t.each(c,function(e,n){for(var r="",d=0;d<n.length;d++)-1==t.inArray(d,i)&&(r+='"'+t.fn.datatableExport.cleanCellMarkup(a,n[d])+'";');""!=r&&(r=r.slice(0,-1)),l+=r+"\n"}),t("#"+a+"-extract-csv").length\|\|t("#"+a).append('<a id="'+a+'-extract-csv" href="data:text/csv;charset=UTF-8,'+encodeURI(l)+'" download="data.csv" style="display:none;"></a>'),t("#"+a+"-extract-csv")[0].click()}}(jQuery);
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	66 </script>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	67 <script type="text/javascript">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	68 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	69 * Returns the string representation of the number.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	70 * @param pValue {Float} The number to process.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	71 * @return {String} The string representation (example: 12856892.11111 => 12,856,892.11).
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	72 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	73 var numberDisplay = function( pValue ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	74 var new_val = "" ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	75 if( ("" + pValue + "").indexOf(".") != -1 ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	76 new_val = pValue.toFixed(2).replace(/(\d)(?=(\d{3})+\b)/g, '$1,');
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	77 } else {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	78 new_val = pValue.toFixed().replace(/(\d)(?=(\d{3})+\b)/g, '$1,');
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	79 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	80 return new_val ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	81 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	82
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	83 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	84 * Returns hash use to init HightChart line.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	85 * @param pTitle {String} The title of the chart.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	86 * @param pXTitle {String} The xAxis title.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	87 * @param pYTitle {String} The yAxis title.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	88 * @param pXCategories {Array} x scale labels.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	89 * @param pData {Array} The HightChart series.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	90 * @return {Hash} Parameters to use in Highchart's constructor.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	91 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	92 var lineplot_param = function(pTitle, pXTitle, pYTitle, pXCategories, pData) {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	93 return {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	94 chart: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	95 type: 'line',
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	96 zoomType: 'x'
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	97 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	98 title: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	99 text: pTitle
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	100 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	101 xAxis: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	102 title: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	103 text: pXTitle
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	104 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	105 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	106 yAxis: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	107 min: 0,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	108 title: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	109 text: pYTitle
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	110 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	111 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	112 series: pData,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	113 tooltip: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	114 formatter:function() {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	115 tooltip_head = '<b>Length ' + this.x + 'nt</b>' ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	116 tooltip_body = '' ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	117 for( var i=0 ; i<this.points.length ; i++) {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	118 tooltip_body += '' +
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	119 '<tr>' +
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	120 ' <td style="color:' + this.points[i].series.color +'">' + this.points[i].series.name + ': </td>' +
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	121 ' <td> ' + numberDisplay(this.points[i].point.y) + ' </td>' +
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	122 ' <td> seq</td>' +
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	123 '</tr>' ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	124 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	125 return tooltip_head + '<table>' + tooltip_body + '</table>' ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	126 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	127 shared: true,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	128 useHTML: true
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	129 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	130 legend: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	131 enabled: true
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	132 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	133 credits: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	134 enabled: false
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	135 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	136 };
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	137 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	138
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	139 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	140 * Returns hash use to init HightChart column.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	141 * @param pTitle {String} The title of the chart.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	142 * @param pYTitle {String} The yAxis title.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	143 * @param pCategories {Array} x scale labels.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	144 * @param pSeries {Array} The HightChart series.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	145 * @param unity {String} Unity used in tooltip.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	146 * @return {Hash} Parameters to use in Highchart's constructor.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	147 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	148 var histogram_param = function( pTitle, pYTitle, pCategories, pSeries, unity ) {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	149 var param = {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	150 chart: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	151 type: 'column'
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	152 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	153 title: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	154 text: pTitle
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	155 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	156 xAxis: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	157 categories: pCategories,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	158 crosshair: true
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	159 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	160 yAxis: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	161 min: 0,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	162 title: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	163 text: pYTitle
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	164 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	165 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	166 tooltip: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	167 headerFormat: '<span style="font-size:10px">{point.key}</span><table>',
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	168 pointFormat: '<tr><td style="color:{series.color};padding:0">{series.name}: </td>' +
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	169 '<td style="padding:0"><b>{point.y} ' + unity + '</b></td></tr>',
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	170 footerFormat: '</table>',
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	171 shared: true,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	172 useHTML: true
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	173 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	174 plotOptions: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	175 column: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	176 pointPadding: 0.2,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	177 borderWidth: 0
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	178 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	179 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	180 credits: {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	181 enabled: false
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	182 },
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	183 series: pSeries
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	184 };
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	185
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	186 return param ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	187 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	188
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	189 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	190 //
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	191 // Data
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	192 //
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	193 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	194 var filters_categories = ["before process", "overlapped", "with expected length", "with 5' primer", "with 3' primer", "with expected length", "without N"] ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	195 /* Example:
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	196 ["before process", "overlapped", "with expected length", "with 5' primer", "with 3' primer", "with expected length", "without N"]
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	197 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	198 var filters_by_sample = {"splA_01": [88684, 84138, 82277, 80896, 80638, 80630, 80630], "splA_02": [54167, 51359, 49979, 49063, 48917, 48917, 48917], "splA_03": [32386, 30735, 29964, 29396, 29304, 29304, 29304]} ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	199 /* Example:
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	200 {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	201 "sampleA": [90126, 90126, 90126, 89697, 89697, 89697, 89697],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	202 "sampleB": [213043, 209801, 0, 0, 0, 0, 0]
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	203 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	204 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	205 var before_lengths_by_sample = {"splA_01": {"407": 2140, "406": 1041, "405": 1271, "404": 959, "340": 32, "402": 985, "401": 487, "400": 374, "281": 2, "283": 3, "282": 3, "348": 30, "349": 27, "409": 2974, "408": 3016, "336": 25, "440": 244, "331": 25, "330": 15, "263": 4, "421": 3254, "261": 5, "267": 9, "456": 13, "265": 9, "264": 2, "269": 3, "268": 1, "423": 3013, "365": 30, "425": 5254, "424": 2313, "414": 442, "415": 755, "416": 385, "417": 149, "410": 686, "411": 249, "412": 493, "413": 468, "371": 30, "370": 26, "373": 28, "372": 26, "418": 215, "419": 424, "377": 32, "376": 28, "319": 14, "318": 15, "313": 12, "312": 6, "311": 7, "310": 7, "317": 10, "316": 14, "315": 14, "314": 5, "393": 4961, "392": 1897, "391": 1388, "390": 1728, "397": 127, "396": 158, "395": 298, "394": 2709, "278": 1, "279": 4, "399": 239, "398": 227, "457": 10, "379": 20, "378": 63, "256": 2, "429": 1476, "428": 1626, "447": 6085, "368": 40, "369": 28, "366": 33, "367": 30, "364": 18, "422": 1327, "362": 20, "363": 27, "427": 5948, "426": 2039, "308": 11, "309": 11, "449": 50, "448": 172, "298": 5, "300": 2, "301": 5, "302": 2, "303": 7, "304": 9, "305": 16, "445": 2243, "446": 2131, "380": 27, "381": 35, "382": 45, "383": 36, "384": 28, "385": 35, "386": 52, "387": 374, "388": 1457, "389": 2718, "443": 246, "444": 754, "306": 8, "295": 2, "360": 35, "296": 1, "420": 505, "374": 25, "290": 3, "438": 328, "439": 294, "436": 382, "437": 360, "434": 750, "299": 6, "432": 430, "433": 1099, "307": 7, "431": 670, "458": 23, "459": 16, "339": 24, "338": 25, "335": 22, "334": 19, "452": 12, "453": 13, "454": 17, "455": 11, "333": 27, "332": 19, "258": 3, "259": 2, "252": 2, "442": 160, "251": 1, "253": 2, "257": 3, "255": 2, "344": 24, "288": 3, "346": 26, "347": 25, "297": 6, "403": 1238, "341": 22, "342": 26, "343": 28, "460": 12, "289": 1, "270": 2, "271": 3, "285": 1, "272": 2, "284": 1, "273": 3, "276": 3, "277": 2, "361": 22, "292": 5, "375": 26, "355": 29, "441": 580, "322": 11, "323": 19, "320": 13, "321": 20, "326": 16, "327": 22, "324": 22, "325": 20, "328": 25, "329": 19, "352": 18, "450": 14, "293": 3, "435": 274, "291": 1, "451": 18, "357": 49, "356": 34, "345": 27, "354": 28, "353": 22, "430": 821, "351": 36, "350": 16, "337": 20, "358": 38, "359": 28, "266": 3}, "splA_02": {"407": 1189, "406": 640, "405": 706, "404": 635, "340": 16, "402": 671, "342": 18, "400": 255, "281": 3, "280": 2, "283": 2, "282": 5, "348": 22, "284": 5, "287": 3, "408": 1696, "336": 13, "440": 126, "331": 19, "330": 17, "263": 2, "421": 2279, "261": 3, "260": 4, "267": 7, "266": 1, "265": 6, "264": 2, "269": 1, "268": 4, "423": 1866, "365": 29, "425": 2750, "424": 1309, "414": 283, "378": 52, "416": 307, "417": 88, "410": 500, "411": 170, "412": 312, "413": 334, "371": 15, "370": 14, "373": 12, "295": 8, "418": 173, "374": 16, "290": 7, "376": 13, "319": 10, "318": 16, "313": 7, "312": 5, "311": 11, "310": 8, "317": 17, "316": 11, "315": 9, "314": 5, "393": 2840, "392": 1168, "391": 811, "390": 897, "397": 94, "396": 115, "395": 169, "277": 6, "399": 155, "398": 199, "379": 17, "415": 537, "256": 2, "429": 1038, "428": 1015, "447": 3589, "368": 13, "369": 17, "366": 30, "367": 12, "364": 27, "422": 734, "362": 11, "363": 15, "427": 3756, "426": 1256, "308": 11, "309": 6, "449": 37, "448": 113, "298": 2, "300": 5, "301": 2, "302": 8, "303": 5, "304": 5, "305": 8, "445": 1353, "446": 1345, "380": 14, "381": 11, "382": 22, "383": 19, "384": 12, "385": 20, "386": 31, "387": 162, "388": 827, "389": 1490, "443": 165, "444": 450, "294": 6, "306": 8, "333": 20, "372": 17, "360": 12, "296": 3, "420": 370, "419": 324, "377": 29, "438": 228, "439": 185, "436": 207, "437": 239, "434": 452, "299": 5, "432": 310, "433": 725, "307": 2, "431": 440, "458": 13, "459": 6, "339": 19, "338": 18, "450": 15, "334": 19, "452": 4, "453": 6, "454": 4, "455": 9, "456": 12, "457": 8, "258": 1, "259": 1, "252": 1, "442": 116, "251": 1, "253": 2, "257": 4, "254": 1, "255": 4, "344": 21, "288": 1, "346": 18, "347": 16, "297": 2, "403": 856, "341": 19, "401": 326, "343": 13, "460": 4, "289": 7, "270": 1, "271": 5, "272": 4, "349": 18, "273": 3, "409": 1770, "332": 13, "274": 2, "286": 5, "275": 5, "276": 2, "394": 1540, "361": 7, "292": 4, "375": 20, "355": 19, "441": 355, "322": 16, "323": 15, "320": 9, "321": 9, "326": 15, "327": 17, "324": 10, "325": 16, "328": 22, "329": 11, "335": 14, "352": 18, "293": 4, "435": 211, "262": 2, "291": 4, "451": 9, "357": 38, "356": 15, "345": 18, "354": 17, "353": 22, "430": 502, "351": 22, "350": 10, "337": 20, "359": 17, "358": 19}, "splA_03": {"407": 723, "406": 373, "405": 444, "404": 361, "340": 12, "402": 354, "401": 181, "400": 144, "281": 3, "280": 2, "283": 1, "282": 1, "348": 15, "349": 11, "409": 1106, "408": 1083, "336": 11, "440": 92, "331": 10, "330": 6, "263": 1, "366": 19, "261": 1, "260": 1, "267": 4, "456": 5, "265": 1, "367": 8, "269": 2, "457": 7, "423": 1114, "365": 11, "425": 1859, "424": 775, "414": 172, "415": 269, "416": 165, "417": 57, "410": 267, "411": 89, "412": 196, "413": 187, "371": 12, "370": 9, "373": 15, "372": 8, "418": 96, "419": 167, "377": 10, "376": 12, "319": 1, "318": 3, "313": 3, "311": 4, "310": 3, "317": 4, "316": 3, "315": 7, "314": 1, "393": 1739, "392": 740, "391": 499, "390": 636, "397": 44, "396": 64, "395": 114, "394": 1022, "278": 1, "279": 2, "399": 104, "398": 83, "379": 10, "378": 26, "256": 3, "429": 597, "428": 595, "447": 2139, "368": 9, "369": 9, "421": 1206, "420": 187, "364": 12, "422": 465, "362": 8, "363": 9, "427": 2140, "426": 714, "308": 10, "309": 3, "449": 14, "448": 68, "298": 3, "300": 1, "301": 2, "302": 1, "303": 3, "304": 5, "305": 9, "445": 842, "446": 803, "380": 9, "381": 15, "382": 9, "383": 14, "384": 11, "385": 13, "386": 19, "387": 111, "388": 471, "389": 969, "443": 92, "444": 267, "294": 2, "306": 1, "295": 2, "360": 14, "296": 1, "292": 2, "374": 12, "290": 2, "438": 144, "439": 102, "436": 135, "437": 133, "434": 271, "435": 110, "432": 171, "433": 380, "307": 3, "431": 277, "458": 10, "459": 6, "339": 12, "338": 12, "335": 10, "334": 9, "452": 4, "453": 3, "454": 7, "455": 3, "333": 13, "332": 6, "258": 1, "252": 1, "442": 64, "253": 4, "257": 3, "255": 2, "344": 6, "288": 1, "346": 14, "347": 11, "403": 474, "341": 6, "342": 9, "343": 11, "460": 4, "289": 2, "270": 1, "271": 3, "285": 1, "272": 1, "284": 4, "273": 3, "287": 1, "286": 1, "275": 1, "276": 2, "277": 4, "361": 2, "375": 10, "355": 12, "441": 241, "322": 6, "323": 8, "320": 8, "321": 7, "326": 6, "327": 7, "324": 8, "325": 7, "328": 14, "329": 4, "352": 9, "450": 7, "293": 4, "262": 1, "291": 4, "451": 6, "357": 20, "356": 12, "345": 13, "354": 11, "353": 10, "430": 311, "351": 15, "350": 4, "337": 9, "358": 15, "359": 9, "266": 1}} ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	206 /* Example:
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	207 {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	208 "sampleA": {"395": 1, "381": 192, "382": 1790, "383": 2903, "384": 1078, "385": 10536, "386": 18182, "387": 8613, "388": 1097, "389": 7},
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	209 "sampleB": {}
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	210 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	211 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	212
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	213 var after_lengths_by_sample = {"splA_01": {"357": 1707, "387": 304, "353": 10, "375": 3005, "348": 11, "393": 1723, "392": 5450, "391": 2070, "390": 3023, "397": 818, "396": 1494, "395": 1622, "394": 6216, "358": 1324, "399": 367, "398": 658, "354": 255, "414": 6477, "374": 2047, "415": 143, "352": 4, "355": 1348, "407": 208, "406": 288, "405": 306, "347": 5, "403": 366, "402": 267, "368": 442, "369": 951, "366": 195, "367": 347, "423": 3, "365": 213, "362": 287, "363": 142, "360": 5113, "426": 5, "401": 751, "356": 2790, "351": 8, "400": 1110, "370": 1231, "380": 462, "381": 398, "382": 768, "383": 375, "384": 122, "385": 192, "386": 403, "420": 3, "388": 3336, "389": 1202, "364": 116, "411": 596, "372": 1239, "359": 1642, "350": 7, "425": 12, "404": 352, "349": 28, "379": 477, "378": 199, "416": 44, "417": 8, "410": 206, "409": 132, "412": 2260, "413": 1843, "371": 926, "408": 590, "373": 980, "361": 2820, "418": 8, "419": 4, "377": 700, "376": 3076}, "splA_02": {"372": 694, "357": 894, "353": 8, "375": 1664, "348": 1, "393": 1070, "392": 2835, "391": 1196, "390": 1882, "397": 507, "396": 1056, "395": 1005, "394": 3915, "358": 730, "399": 277, "398": 420, "354": 103, "414": 3806, "374": 1166, "415": 101, "352": 4, "355": 788, "407": 112, "406": 183, "405": 227, "347": 3, "403": 209, "402": 196, "368": 306, "369": 652, "366": 141, "367": 222, "423": 4, "365": 182, "362": 148, "363": 103, "360": 2922, "426": 2, "401": 454, "356": 1490, "400": 742, "370": 845, "380": 326, "381": 259, "382": 528, "383": 306, "384": 75, "385": 150, "386": 283, "387": 222, "388": 2378, "389": 632, "364": 85, "411": 372, "422": 1, "359": 1021, "350": 1, "425": 4, "404": 219, "349": 15, "379": 302, "378": 152, "416": 31, "417": 9, "410": 138, "409": 100, "412": 1327, "413": 1195, "371": 604, "408": 360, "373": 588, "361": 1624, "418": 4, "419": 1, "377": 487, "376": 1853}, "splA_03": {"357": 624, "387": 120, "353": 2, "375": 1070, "348": 4, "393": 634, "392": 1909, "391": 706, "390": 1104, "397": 324, "396": 589, "395": 596, "394": 2213, "358": 475, "399": 146, "398": 261, "354": 64, "414": 2289, "374": 699, "415": 55, "352": 1, "355": 439, "407": 81, "406": 102, "405": 138, "347": 1, "403": 137, "402": 100, "368": 171, "369": 340, "366": 86, "367": 128, "423": 1, "365": 80, "362": 116, "363": 51, "360": 1812, "426": 2, "401": 269, "356": 976, "351": 4, "400": 390, "370": 471, "380": 183, "381": 162, "382": 266, "383": 154, "384": 50, "385": 79, "386": 155, "420": 1, "388": 1242, "389": 416, "364": 44, "411": 217, "372": 440, "359": 634, "425": 4, "404": 123, "349": 5, "379": 190, "378": 68, "416": 13, "417": 4, "410": 81, "409": 53, "412": 832, "413": 704, "371": 353, "408": 242, "373": 346, "361": 1050, "418": 1, "419": 2, "377": 268, "376": 1142}} ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	214 /* Example:
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	215 {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	216 "sampleA": {"395": 1, "381": 192, "382": 1790, "383": 2903, "384": 1078, "385": 10536, "386": 18182, "387": 8613, "388": 1097, "389": 7},
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	217 "sampleB": {}
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	218 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	219 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	220
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	221
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	222 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	223 //
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	224 // Main
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	225 //
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	226 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	227 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	228 * Disables/enables buttons in datatable.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	229 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	230 var updateButtonState = function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	231 $("#display-spl-lengths").removeClass( "disabled" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	232 if( $('input[id^="filterBySample-chk-"]:checked').length == 0 ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	233 $("#display-spl-lengths").addClass( "disabled" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	234 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	235 $("#display-after-spl-lengths").removeClass( "disabled" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	236 if( $('input[id^="filterBySample-chk-"]:checked').length == 0 ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	237 $("#display-after-spl-lengths").addClass( "disabled" );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	238 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	239 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	240
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	241 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	242 * Draws for the selected sample(s) the line chart that represents the number of sequences by sequence length.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	243 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	244 var setLengthsGraph = function(lengths_by_sample,title){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	245 var selected_series = new Array();
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	246 $('input[id^="filterBySample-chk-"]').each( function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	247 if( $(this).is(':checked')){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	248 var sample_name = $(this).prop('id').substring(19, $(this).prop('id').length) ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	249 // Find min and max for the sample
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	250 var min_length = null ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	251 var max_length = null ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	252 for(seq_length in lengths_by_sample[sample_name]){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	253 if( max_length === null ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	254 min_length = parseInt(seq_length) ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	255 max_length = parseInt(seq_length) ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	256 } else {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	257 min_length = Math.min( min_length, parseInt(seq_length) );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	258 max_length = Math.max( max_length, parseInt(seq_length) );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	259 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	260 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	261 // Complete data
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	262 var sample_data = new Array();
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	263 if( max_length !== null ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	264 for( var curr_length = min_length ; curr_length <= max_length ; curr_length++ ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	265 if( lengths_by_sample[sample_name].hasOwnProperty(curr_length.toString()) ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	266 sample_data.push([
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	267 curr_length,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	268 lengths_by_sample[sample_name][curr_length.toString()]
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	269 ]);
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	270 } else {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	271 sample_data.push( [curr_length, null] );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	272 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	273 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	274 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	275 // Add serie
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	276 selected_series.push({
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	277 "name": sample_name,
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	278 "data": sample_data
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	279 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	280 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	281 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	282 // Draw chart
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	283 $('#lengths-chart').highcharts( lineplot_param(title, "Length", "Nb sequences", null, selected_series) );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	284 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	285
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	286 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	287 * Draws the bar chart that represents the total number of sequences after each filter.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	288 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	289 var summaryLoad = function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	290 var global_data = new Array();
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	291 for( var spl_name in filters_by_sample ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	292 var nb_by_step = filters_by_sample[spl_name] ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	293 for( var step_idx = 0 ; step_idx < filters_by_sample[spl_name].length ; step_idx++ ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	294 if( global_data.length < step_idx+1 ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	295 global_data.push(0);
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	296 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	297 global_data[step_idx] += nb_by_step[step_idx] ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	298 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	299 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	300 var global_series = [{ name: 'All samples', data: global_data }];
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	301 $('#filter-summary').highcharts( histogram_param('Filtering summary', 'Nb sequences', filters_categories, global_series, 'seq') );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	302 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	303
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	304 /**
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	305 * Set the table that represents by sample the number of sequences after each filter.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	306 */
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	307 var sampleDetailsLoad = function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	308 // Table titles
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	309 var titles = [ '<input id="filterBySample-check-all" type="checkbox" value="1">', "Samples" ];
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	310 titles.push( '% kept' );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	311 for( var rank = 0 ; rank < filters_categories.length ; rank++ ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	312 titles.push( filters_categories[rank] );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	313 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	314 $('#filterBySample-table thead').append( '<tr><th>' + titles.join("</th><th>") + '</th></tr>' );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	315 $('#filterBySample-table .title').attr( "colspan", titles.length );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	316 $('#filterBySample-table tfoot th').each(function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	317 $(this).attr( "colspan", titles.length );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	318 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	319
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	320 // Table data
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	321 for( var sample_name in filters_by_sample ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	322 var sample_data = ['<input id="filterBySample-chk-' + sample_name + '" type="checkbox" value="1">', sample_name] ;
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	323 var prct_kept = filters_by_sample[sample_name][filters_categories.length-1]/filters_by_sample[sample_name][0]*100
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	324 sample_data.push( numberDisplay(prct_kept) );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	325 for( var idx = 0 ; idx < filters_by_sample[sample_name].length ; idx++){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	326 sample_data.push( numberDisplay(filters_by_sample[sample_name][idx]) );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	327 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	328 // Add row data
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	329 $('#filterBySample-table tbody').append( '<tr><td>' + sample_data.join("</td><td>") + '</td></tr>' );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	330 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	331
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	332 // Check all management
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	333 $('#filterBySample-check-all').on('change', function (e) { // Manage check all
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	334 if( $(this).is(':checked') ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	335 $('input[id^="filterBySample-chk-"]').each( function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	336 $(this).prop( 'checked', true );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	337 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	338 } else {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	339 $('input[id^="filterBySample-chk-"]').each( function(){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	340 $(this).prop( 'checked', false );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	341 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	342 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	343 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	344 $('input[id^="filterBySample-chk-"]').on('change', function (e) { // Uncheck select all when uncheck one sample
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	345 if( !$(this).is(':checked') && $('#filterBySample-check-all').is(':checked') ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	346 $('#filterBySample-check-all').prop( 'checked', false );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	347 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	348 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	349
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	350 // Buttons enable/disable management
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	351 $('input[id^="filterBySample-check-all"]').on( 'change', updateButtonState );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	352 $('input[id^="filterBySample-chk-"]').on( 'change', updateButtonState );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	353
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	354 // Datatable
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	355 $('#filterBySample-table').DataTable({
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	356 "sDom": '<"top"<"#filterBySample-csv-export"><"clear">lf>rt<"bottom"ip><"clear">',
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	357 'order': [[1, 'asc']],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	358 'columnDefs': [{
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	359 'targets': [0],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	360 'orderable': false
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	361 }],
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	362 "fnDrawCallback": updateButtonState
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	363 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	364 // Datatable export
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	365 $('#filterBySample-csv-export').html( '<button class="btn btn-primary"><span class="glyphicon glyphicon-open-file" aria-hidden="true">CSV</span></button>' );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	366 $('#filterBySample-csv-export').addClass( 'dataTables_filter' );
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	367 $('#filterBySample-csv-export').datatableExport({
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	368 'table_id': "filterBySample-table",
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	369 'omitted_columns': [0]
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	370 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	371
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	372 // Add modal listener
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	373 $('#lengths-modal').on('shown.bs.modal', function (event) {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	374 var button = $(event.relatedTarget); // Button that triggered the modal
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	375 var data_type = button.data('whatever');
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	376 if( data_type == "before-process" ){
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	377 setLengthsGraph(before_lengths_by_sample,"Amplicon length distribution before trimming and filtering");
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	378 } else {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	379 setLengthsGraph(after_lengths_by_sample,"Preprocessed Amplicon Length distribution");
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	380 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	381 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	382 }
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	383
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	384 $(function() {
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	385 // Remove alert
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	386 $('#js-alert').remove();
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	387 $('#content').removeClass("hidden");
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	388
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	389 // Display summary
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	390 summaryLoad();
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	391
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	392 // Display data by sample
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	393 sampleDetailsLoad();
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	394 });
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	395 </script>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	396 </head>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	397 <body>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	398 <!-- Alert -->
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	399 <p id="js-alert" class="alert alert-warning">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	400 javascript is needed to display data.<br />
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	401 If you try to view this data on galaxy please contact your administrator to authorise javascript or download the file to view.
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	402 </p>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	403
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	404 <!-- Content -->
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	405 <div id="content" class="hidden">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	406 <div id="filter-summary"></div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	407 <div id="filter-log">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	408 <table id="filterBySample-table" class="table table-striped">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	409 <thead>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	410 <tr>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	411 <th class="title">Filtering by sample</th>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	412 </tr>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	413 </thead>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	414 <tbody></tbody>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	415 <tfoot>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	416 <tr>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	417 <th>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	418 <span class="table-action">With selection:</span>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	419 <button id="display-spl-lengths" class="btn btn-primary table-action fusion-right disabled" data-toggle="modal" data-target="#lengths-modal" data-whatever="before-process">Display amplicon lengths </button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	420 <button id="display-after-spl-lengths" class="btn btn-primary table-action disabled" data-toggle="modal" data-target="#lengths-modal" data-whatever="after-process">Display preprocessed amplicon lengths</button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	421 </th>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	422 </tr>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	423 </tfoot>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	424 </table>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	425 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	426 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	427
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	428 <!-- Modals -->
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76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	430 <div class="modal-dialog modal-lg">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	431 <div class="modal-content">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	432 <div class="modal-header">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	433 <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">×</span></button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	434 <h4 class="modal-title">Amplicons lengths</h4>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	435 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	436 <div class="modal-body">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	437 <div id="lengths-chart"></div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	438 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	439 <div class="modal-footer">
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	440 <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	441 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	442 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	443 </div>
76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty frogs parents: diff changeset	444 </div>
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0

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1 <!DOCTYPE html>

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2 <!--

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4 #

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5 # This program is free software: you can redistribute it and/or modify

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6 # it under the terms of the GNU General Public License as published by

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7 # the Free Software Foundation, either version 3 of the License, or

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8 # (at your option) any later version.

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9 #

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10 # This program is distributed in the hope that it will be useful,

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11 # but WITHOUT ANY WARRANTY; without even the implied warranty of

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12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the

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13 # GNU General Public License for more details.

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14 #

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15 # You should have received a copy of the GNU General Public License

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16 # along with this program. If not, see <http://www.gnu.org/licenses/>.

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17 -->

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18 <html>

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19 <head>

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20 <title>FROGS Pre-process</title>

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21 <meta charset="UTF-8">

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22 <meta name="version" content="1.2.1">

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23

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24 <link rel="stylesheet" href="https://cdn.datatables.net/1.10.6/css/jquery.dataTables.css"></link>

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25 <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/css/bootstrap.min.css"></link>

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26 <style type="text/css">

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27 #js-alert {

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28 width: 90%;

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29 margin-right: auto;

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30 margin-left: auto;

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31 }

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32 #content {

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33 width: 90%;

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34 margin-right: auto;

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35 margin-left: auto;

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36 }

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37 .clear {

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38 clear: both;

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39 height: 0px;

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40 width: 100%;

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41 float: none !important;

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42 }

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43 </style>

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44

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45 <script type="text/javascript" src="http://code.jquery.com/jquery-2.1.3.min.js"></script>

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46 <script type="text/javascript" src="http://code.highcharts.com/4.1.4/highcharts.js"></script>

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47 <script type="text/javascript" src="http://code.highcharts.com/4.1.4/modules/exporting.js"></script>

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48 <script type="text/javascript" src="https://cdn.datatables.net/1.10.6/js/jquery.dataTables.min.js"></script>

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49 <script type="text/javascript" src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/js/bootstrap.min.js"></script>

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50 <script type="text/javascript">

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51 /*

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52 * HTMLTable.js 0.1.0 - HTMLTable Library

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53 *

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55 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.

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56 */

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57 function HTMLtable(e){var t,r,n=e,a=";";this.deleteColumns=function(e){for(var a=n.getElementsByTagName("tr"),o=0;o<a.length;o++){s=0;var i=a[o].getElementsByTagName("td");0==i.length&&(i=a[o].getElementsByTagName("th"));for(var v=0,s=0;s<t[1];s++)if(!r[o][s]){var f=i[v].getAttribute("colspan");if(null!=f)for(var m=0;f>m;m++){if(in_array(s+m,e)){var u=i[v].getAttribute("colspan");u-1==0?i[v].removeAttribute("colspan"):i[v].setAttribute("colspan",u-1)}if(null==i[v].getAttribute("colspan")){var h=i[v];a[o].removeChild(h),v--}}else if(in_array(s,e)){var h=i[v];a[o].removeChild(h),v--}v++}}l(),g()},this.filter=function(e,a){var l=new RegExp(e),g=new Array;null!=a&&a||(g.c0=!0);for(var o=n.getElementsByTagName("tr"),i=0;i<o.length;i++){f=0;var v=o[i].getElementsByTagName("td");if(0!=v.length)for(var s=0,f=0;f<t[1];f++)r[i][f]||(l.test(v[s].innerHTML)&&(g["c"+f]=!0),s++)}for(var m=new Array,u=0;u<t[1];u++)void 0===g["c"+u]&&m.push(u);this.deleteColumns(m)},this.getModel=function(){return n};var l=function(){for(var e=0,r=0,a=n.getElementsByTagName("tr"),l=0;l<a.length;l++){var g=0;e++;var o=a[l].getElementsByTagName("td");0==o.length&&(o=a[l].getElementsByTagName("th"));for(var i=0;i<o.length;i++){var v=o[i].getAttribute("colspan");g+=null==v?1:parseInt(v)}g>r&&(r=g)}t=new Array(2),t[0]=e,t[1]=r},g=function(){r=new Array(t[0]);for(var e=0;e<t[0];e++){r[e]=new Array(t[1]);for(var a=0;a<t[1];a++)r[e][a]=!1}for(var l=n.getElementsByTagName("tr"),g=0;g<l.length;g++){v=0;var o=l[g].getElementsByTagName("td");0==o.length&&(o=l[g].getElementsByTagName("th"));for(var i=0,v=0;v<t[1];v++)if(!r[g][v]){var s=0,f=0,m=o[i].getAttribute("rowspan");null!=m&&(s=parseInt(m)-1);var u=o[i].getAttribute("colspan");null!=u&&(f=parseInt(u)-1);for(var h=s;h>=0;h--)for(var y=f;y>=0;y--)(0!=h||0!=y)&&(r[g+h][v+y]=!0);i++}}};this.replace=function(e,a,l){var g=new RegExp(e);null==a&&(a=""),null==l&&(l="");for(var o=n.getElementsByTagName("tr"),i=0;i<o.length;i++){f=0;var v=o[i].getElementsByTagName("td");if(0!=v.length)for(var s=0,f=0;f<t[1];f++)if(!r[i][f]){var m=g.exec(v[s].innerHTML);null!=m&&(void 0===m[1]&&(m[1]=""),v[s].innerHTML=a+m[1]+l),s++}}},this.toCSV=function(){for(var e="",l=n.getElementsByTagName("tr"),g=0;g<l.length;g++){var o=l[g].getElementsByTagName("td");0==o.length&&(o=l[g].getElementsByTagName("th"));for(var i=0,v=0;v<t[1];v++)r[g][v]||(e+=o[i].innerHTML,i++),e+=a;e=e.substr(0,e.length-1)+"\n"}return e},l(),g()}var in_array=function(e,t){for(var r in t)if(t[r]==e)return!0;return!1};

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58

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59 /*

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60 * dataTableExtractor.plugin.js 0.1.0 - datatableExport Library

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61 *

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63 * Licensed under the MIT (http://www.opensource.org/licenses/mit-license.php) license.

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64 */

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65 !function(t){t.fn.datatableExport=function(a){var e={anchor_id:t(this).attr("id"),table_id:null,csv_separator:";",omitted_columns:[]},n=t.extend(e,a);if(!t(this).length)throw"The element where the datatableExport is called does not exist.";if(void 0==n.anchor_id)throw"The datatableExport plugin must be called on an element with id.";if(null==n.table_id)throw"You must set the table_id parameter in datatableExport plugin.";if(!t("#"+n.table_id))throw"The datatable '#"+n.table_id+"' cannot be retieve in DOM.";return this.each(function(){var a=t(this);a.on("click",function(){t.fn.datatableExport.csv(n.anchor_id,n.table_id,n.csv_separator,n.omitted_columns)})})},t.fn.datatableExport.cleanCellMarkup=function(a,e){t.parseHTML(e);t("#"+a).append('<div class="hidden data-tmp">'+e+"</div>"),t("#"+a+" .data-tmp").find("input").each(function(){var a="";a=t(this).is(":checkbox")?t(this).is(":checked")?"true":"false":t(this).val(),t(this).replaceWith(a)});var n=t("#"+a+" .data-tmp").text();return t("#"+a+" .data-tmp").remove(),n},t.fn.datatableExport.csv=function(a,e,n,i){var l="",r=t("#"+e).DataTable(),d=t("#"+e+" thead")[0],o=new HTMLtable(d.cloneNode(!0));o.deleteColumns(i),l+=o.toCSV();var c=r.rows().data();t.each(c,function(e,n){for(var r="",d=0;d<n.length;d++)-1==t.inArray(d,i)&&(r+='"'+t.fn.datatableExport.cleanCellMarkup(a,n[d])+'";');""!=r&&(r=r.slice(0,-1)),l+=r+"\n"}),t("#"+a+"-extract-csv").length||t("#"+a).append('<a id="'+a+'-extract-csv" href="data:text/csv;charset=UTF-8,'+encodeURI(l)+'" download="data.csv" style="display:none;"></a>'),t("#"+a+"-extract-csv")[0].click()}}(jQuery);

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66 </script>

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67 <script type="text/javascript">

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68 /**

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69 * Returns the string representation of the number.

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70 * @param pValue {Float} The number to process.

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71 * @return {String} The string representation (example: 12856892.11111 => 12,856,892.11).

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72 */

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73 var numberDisplay = function( pValue ){

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74 var new_val = "" ;

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75 if( ("" + pValue + "").indexOf(".") != -1 ){

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76 new_val = pValue.toFixed(2).replace(/(\d)(?=(\d{3})+\b)/g, '$1,');

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77 } else {

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78 new_val = pValue.toFixed().replace(/(\d)(?=(\d{3})+\b)/g, '$1,');

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79 }

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80 return new_val ;

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81 }

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82

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83 /**

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84 * Returns hash use to init HightChart line.

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85 * @param pTitle {String} The title of the chart.

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86 * @param pXTitle {String} The xAxis title.

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87 * @param pYTitle {String} The yAxis title.

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88 * @param pXCategories {Array} x scale labels.

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89 * @param pData {Array} The HightChart series.

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90 * @return {Hash} Parameters to use in Highchart's constructor.

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91 */

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92 var lineplot_param = function(pTitle, pXTitle, pYTitle, pXCategories, pData) {

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93 return {

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94 chart: {

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95 type: 'line',

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96 zoomType: 'x'

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97 },

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98 title: {

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99 text: pTitle

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100 },

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101 xAxis: {

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102 title: {

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103 text: pXTitle

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104 }

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105 },

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106 yAxis: {

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107 min: 0,

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108 title: {

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109 text: pYTitle

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110 }

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111 },

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112 series: pData,

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113 tooltip: {

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114 formatter:function() {

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115 tooltip_head = '<b>Length ' + this.x + 'nt</b>' ;

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116 tooltip_body = '' ;

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117 for( var i=0 ; i<this.points.length ; i++) {

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118 tooltip_body += '' +

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119 '<tr>' +

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120 ' <td style="color:' + this.points[i].series.color +'">' + this.points[i].series.name + ': </td>' +

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121 ' <td> ' + numberDisplay(this.points[i].point.y) + ' </td>' +

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122 ' <td> seq</td>' +

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123 '</tr>' ;

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124 }

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125 return tooltip_head + '<table>' + tooltip_body + '</table>' ;

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126 },

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127 shared: true,

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128 useHTML: true

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129 },

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130 legend: {

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131 enabled: true

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132 },

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133 credits: {

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134 enabled: false

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135 }

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136 };

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137 }

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138

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139 /**

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140 * Returns hash use to init HightChart column.

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141 * @param pTitle {String} The title of the chart.

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142 * @param pYTitle {String} The yAxis title.

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143 * @param pCategories {Array} x scale labels.

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144 * @param pSeries {Array} The HightChart series.

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145 * @param unity {String} Unity used in tooltip.

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146 * @return {Hash} Parameters to use in Highchart's constructor.

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147 */

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148 var histogram_param = function( pTitle, pYTitle, pCategories, pSeries, unity ) {

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149 var param = {

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150 chart: {

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151 type: 'column'

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152 },

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153 title: {

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154 text: pTitle

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155 },

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156 xAxis: {

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157 categories: pCategories,

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158 crosshair: true

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159 },

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160 yAxis: {

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161 min: 0,

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162 title: {

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163 text: pYTitle

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164 }

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165 },

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166 tooltip: {

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167 headerFormat: '<span style="font-size:10px">{point.key}</span><table>',

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168 pointFormat: '<tr><td style="color:{series.color};padding:0">{series.name}: </td>' +

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169 '<td style="padding:0"><b>{point.y} ' + unity + '</b></td></tr>',

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170 footerFormat: '</table>',

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171 shared: true,

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172 useHTML: true

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173 },

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174 plotOptions: {

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175 column: {

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176 pointPadding: 0.2,

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177 borderWidth: 0

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178 }

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179 },

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180 credits: {

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181 enabled: false

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182 },

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183 series: pSeries

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184 };

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185

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186 return param ;

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187 }

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188

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189 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////

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190 //

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191 // Data

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192 //

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193 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////

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194 var filters_categories = ["before process", "overlapped", "with expected length", "with 5' primer", "with 3' primer", "with expected length", "without N"] ;

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195 /* Example:

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196 ["before process", "overlapped", "with expected length", "with 5' primer", "with 3' primer", "with expected length", "without N"]

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197 */

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198 var filters_by_sample = {"splA_01": [88684, 84138, 82277, 80896, 80638, 80630, 80630], "splA_02": [54167, 51359, 49979, 49063, 48917, 48917, 48917], "splA_03": [32386, 30735, 29964, 29396, 29304, 29304, 29304]} ;

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199 /* Example:

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200 {

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201 "sampleA": [90126, 90126, 90126, 89697, 89697, 89697, 89697],

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202 "sampleB": [213043, 209801, 0, 0, 0, 0, 0]

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203 }

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204 */

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205 var before_lengths_by_sample = {"splA_01": {"407": 2140, "406": 1041, "405": 1271, "404": 959, "340": 32, "402": 985, "401": 487, "400": 374, "281": 2, "283": 3, "282": 3, "348": 30, "349": 27, "409": 2974, "408": 3016, "336": 25, "440": 244, "331": 25, "330": 15, "263": 4, "421": 3254, "261": 5, "267": 9, "456": 13, "265": 9, "264": 2, "269": 3, "268": 1, "423": 3013, "365": 30, "425": 5254, "424": 2313, "414": 442, "415": 755, "416": 385, "417": 149, "410": 686, "411": 249, "412": 493, "413": 468, "371": 30, "370": 26, "373": 28, "372": 26, "418": 215, "419": 424, "377": 32, "376": 28, "319": 14, "318": 15, "313": 12, "312": 6, "311": 7, "310": 7, "317": 10, "316": 14, "315": 14, "314": 5, "393": 4961, "392": 1897, "391": 1388, "390": 1728, "397": 127, "396": 158, "395": 298, "394": 2709, "278": 1, "279": 4, "399": 239, "398": 227, "457": 10, "379": 20, "378": 63, "256": 2, "429": 1476, "428": 1626, "447": 6085, "368": 40, "369": 28, "366": 33, "367": 30, "364": 18, "422": 1327, "362": 20, "363": 27, "427": 5948, "426": 2039, "308": 11, "309": 11, "449": 50, "448": 172, "298": 5, "300": 2, "301": 5, "302": 2, "303": 7, "304": 9, "305": 16, "445": 2243, "446": 2131, "380": 27, "381": 35, "382": 45, "383": 36, "384": 28, "385": 35, "386": 52, "387": 374, "388": 1457, "389": 2718, "443": 246, "444": 754, "306": 8, "295": 2, "360": 35, "296": 1, "420": 505, "374": 25, "290": 3, "438": 328, "439": 294, "436": 382, "437": 360, "434": 750, "299": 6, "432": 430, "433": 1099, "307": 7, "431": 670, "458": 23, "459": 16, "339": 24, "338": 25, "335": 22, "334": 19, "452": 12, "453": 13, "454": 17, "455": 11, "333": 27, "332": 19, "258": 3, "259": 2, "252": 2, "442": 160, "251": 1, "253": 2, "257": 3, "255": 2, "344": 24, "288": 3, "346": 26, "347": 25, "297": 6, "403": 1238, "341": 22, "342": 26, "343": 28, "460": 12, "289": 1, "270": 2, "271": 3, "285": 1, "272": 2, "284": 1, "273": 3, "276": 3, "277": 2, "361": 22, "292": 5, "375": 26, "355": 29, "441": 580, "322": 11, "323": 19, "320": 13, "321": 20, "326": 16, "327": 22, "324": 22, "325": 20, "328": 25, "329": 19, "352": 18, "450": 14, "293": 3, "435": 274, "291": 1, "451": 18, "357": 49, "356": 34, "345": 27, "354": 28, "353": 22, "430": 821, "351": 36, "350": 16, "337": 20, "358": 38, "359": 28, "266": 3}, "splA_02": {"407": 1189, "406": 640, "405": 706, "404": 635, "340": 16, "402": 671, "342": 18, "400": 255, "281": 3, "280": 2, "283": 2, "282": 5, "348": 22, "284": 5, "287": 3, "408": 1696, "336": 13, "440": 126, "331": 19, "330": 17, "263": 2, "421": 2279, "261": 3, "260": 4, "267": 7, "266": 1, "265": 6, "264": 2, "269": 1, "268": 4, "423": 1866, "365": 29, "425": 2750, "424": 1309, "414": 283, "378": 52, "416": 307, "417": 88, "410": 500, "411": 170, "412": 312, "413": 334, "371": 15, "370": 14, "373": 12, "295": 8, "418": 173, "374": 16, "290": 7, "376": 13, "319": 10, "318": 16, "313": 7, "312": 5, "311": 11, "310": 8, "317": 17, "316": 11, "315": 9, "314": 5, "393": 2840, "392": 1168, "391": 811, "390": 897, "397": 94, "396": 115, "395": 169, "277": 6, "399": 155, "398": 199, "379": 17, "415": 537, "256": 2, "429": 1038, "428": 1015, "447": 3589, "368": 13, "369": 17, "366": 30, "367": 12, "364": 27, "422": 734, "362": 11, "363": 15, "427": 3756, "426": 1256, "308": 11, "309": 6, "449": 37, "448": 113, "298": 2, "300": 5, "301": 2, "302": 8, "303": 5, "304": 5, "305": 8, "445": 1353, "446": 1345, "380": 14, "381": 11, "382": 22, "383": 19, "384": 12, "385": 20, "386": 31, "387": 162, "388": 827, "389": 1490, "443": 165, "444": 450, "294": 6, "306": 8, "333": 20, "372": 17, "360": 12, "296": 3, "420": 370, "419": 324, "377": 29, "438": 228, "439": 185, "436": 207, "437": 239, "434": 452, "299": 5, "432": 310, "433": 725, "307": 2, "431": 440, "458": 13, "459": 6, "339": 19, "338": 18, "450": 15, "334": 19, "452": 4, "453": 6, "454": 4, "455": 9, "456": 12, "457": 8, "258": 1, "259": 1, "252": 1, "442": 116, "251": 1, "253": 2, "257": 4, "254": 1, "255": 4, "344": 21, "288": 1, "346": 18, "347": 16, "297": 2, "403": 856, "341": 19, "401": 326, "343": 13, "460": 4, "289": 7, "270": 1, "271": 5, "272": 4, "349": 18, "273": 3, "409": 1770, "332": 13, "274": 2, "286": 5, "275": 5, "276": 2, "394": 1540, "361": 7, "292": 4, "375": 20, "355": 19, "441": 355, "322": 16, "323": 15, "320": 9, "321": 9, "326": 15, "327": 17, "324": 10, "325": 16, "328": 22, "329": 11, "335": 14, "352": 18, "293": 4, "435": 211, "262": 2, "291": 4, "451": 9, "357": 38, "356": 15, "345": 18, "354": 17, "353": 22, "430": 502, "351": 22, "350": 10, "337": 20, "359": 17, "358": 19}, "splA_03": {"407": 723, "406": 373, "405": 444, "404": 361, "340": 12, "402": 354, "401": 181, "400": 144, "281": 3, "280": 2, "283": 1, "282": 1, "348": 15, "349": 11, "409": 1106, "408": 1083, "336": 11, "440": 92, "331": 10, "330": 6, "263": 1, "366": 19, "261": 1, "260": 1, "267": 4, "456": 5, "265": 1, "367": 8, "269": 2, "457": 7, "423": 1114, "365": 11, "425": 1859, "424": 775, "414": 172, "415": 269, "416": 165, "417": 57, "410": 267, "411": 89, "412": 196, "413": 187, "371": 12, "370": 9, "373": 15, "372": 8, "418": 96, "419": 167, "377": 10, "376": 12, "319": 1, "318": 3, "313": 3, "311": 4, "310": 3, "317": 4, "316": 3, "315": 7, "314": 1, "393": 1739, "392": 740, "391": 499, "390": 636, "397": 44, "396": 64, "395": 114, "394": 1022, "278": 1, "279": 2, "399": 104, "398": 83, "379": 10, "378": 26, "256": 3, "429": 597, "428": 595, "447": 2139, "368": 9, "369": 9, "421": 1206, "420": 187, "364": 12, "422": 465, "362": 8, "363": 9, "427": 2140, "426": 714, "308": 10, "309": 3, "449": 14, "448": 68, "298": 3, "300": 1, "301": 2, "302": 1, "303": 3, "304": 5, "305": 9, "445": 842, "446": 803, "380": 9, "381": 15, "382": 9, "383": 14, "384": 11, "385": 13, "386": 19, "387": 111, "388": 471, "389": 969, "443": 92, "444": 267, "294": 2, "306": 1, "295": 2, "360": 14, "296": 1, "292": 2, "374": 12, "290": 2, "438": 144, "439": 102, "436": 135, "437": 133, "434": 271, "435": 110, "432": 171, "433": 380, "307": 3, "431": 277, "458": 10, "459": 6, "339": 12, "338": 12, "335": 10, "334": 9, "452": 4, "453": 3, "454": 7, "455": 3, "333": 13, "332": 6, "258": 1, "252": 1, "442": 64, "253": 4, "257": 3, "255": 2, "344": 6, "288": 1, "346": 14, "347": 11, "403": 474, "341": 6, "342": 9, "343": 11, "460": 4, "289": 2, "270": 1, "271": 3, "285": 1, "272": 1, "284": 4, "273": 3, "287": 1, "286": 1, "275": 1, "276": 2, "277": 4, "361": 2, "375": 10, "355": 12, "441": 241, "322": 6, "323": 8, "320": 8, "321": 7, "326": 6, "327": 7, "324": 8, "325": 7, "328": 14, "329": 4, "352": 9, "450": 7, "293": 4, "262": 1, "291": 4, "451": 6, "357": 20, "356": 12, "345": 13, "354": 11, "353": 10, "430": 311, "351": 15, "350": 4, "337": 9, "358": 15, "359": 9, "266": 1}} ;

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206 /* Example:

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207 {

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208 "sampleA": {"395": 1, "381": 192, "382": 1790, "383": 2903, "384": 1078, "385": 10536, "386": 18182, "387": 8613, "388": 1097, "389": 7},

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209 "sampleB": {}

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210 }

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211 */

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212

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213 var after_lengths_by_sample = {"splA_01": {"357": 1707, "387": 304, "353": 10, "375": 3005, "348": 11, "393": 1723, "392": 5450, "391": 2070, "390": 3023, "397": 818, "396": 1494, "395": 1622, "394": 6216, "358": 1324, "399": 367, "398": 658, "354": 255, "414": 6477, "374": 2047, "415": 143, "352": 4, "355": 1348, "407": 208, "406": 288, "405": 306, "347": 5, "403": 366, "402": 267, "368": 442, "369": 951, "366": 195, "367": 347, "423": 3, "365": 213, "362": 287, "363": 142, "360": 5113, "426": 5, "401": 751, "356": 2790, "351": 8, "400": 1110, "370": 1231, "380": 462, "381": 398, "382": 768, "383": 375, "384": 122, "385": 192, "386": 403, "420": 3, "388": 3336, "389": 1202, "364": 116, "411": 596, "372": 1239, "359": 1642, "350": 7, "425": 12, "404": 352, "349": 28, "379": 477, "378": 199, "416": 44, "417": 8, "410": 206, "409": 132, "412": 2260, "413": 1843, "371": 926, "408": 590, "373": 980, "361": 2820, "418": 8, "419": 4, "377": 700, "376": 3076}, "splA_02": {"372": 694, "357": 894, "353": 8, "375": 1664, "348": 1, "393": 1070, "392": 2835, "391": 1196, "390": 1882, "397": 507, "396": 1056, "395": 1005, "394": 3915, "358": 730, "399": 277, "398": 420, "354": 103, "414": 3806, "374": 1166, "415": 101, "352": 4, "355": 788, "407": 112, "406": 183, "405": 227, "347": 3, "403": 209, "402": 196, "368": 306, "369": 652, "366": 141, "367": 222, "423": 4, "365": 182, "362": 148, "363": 103, "360": 2922, "426": 2, "401": 454, "356": 1490, "400": 742, "370": 845, "380": 326, "381": 259, "382": 528, "383": 306, "384": 75, "385": 150, "386": 283, "387": 222, "388": 2378, "389": 632, "364": 85, "411": 372, "422": 1, "359": 1021, "350": 1, "425": 4, "404": 219, "349": 15, "379": 302, "378": 152, "416": 31, "417": 9, "410": 138, "409": 100, "412": 1327, "413": 1195, "371": 604, "408": 360, "373": 588, "361": 1624, "418": 4, "419": 1, "377": 487, "376": 1853}, "splA_03": {"357": 624, "387": 120, "353": 2, "375": 1070, "348": 4, "393": 634, "392": 1909, "391": 706, "390": 1104, "397": 324, "396": 589, "395": 596, "394": 2213, "358": 475, "399": 146, "398": 261, "354": 64, "414": 2289, "374": 699, "415": 55, "352": 1, "355": 439, "407": 81, "406": 102, "405": 138, "347": 1, "403": 137, "402": 100, "368": 171, "369": 340, "366": 86, "367": 128, "423": 1, "365": 80, "362": 116, "363": 51, "360": 1812, "426": 2, "401": 269, "356": 976, "351": 4, "400": 390, "370": 471, "380": 183, "381": 162, "382": 266, "383": 154, "384": 50, "385": 79, "386": 155, "420": 1, "388": 1242, "389": 416, "364": 44, "411": 217, "372": 440, "359": 634, "425": 4, "404": 123, "349": 5, "379": 190, "378": 68, "416": 13, "417": 4, "410": 81, "409": 53, "412": 832, "413": 704, "371": 353, "408": 242, "373": 346, "361": 1050, "418": 1, "419": 2, "377": 268, "376": 1142}} ;

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214 /* Example:

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215 {

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216 "sampleA": {"395": 1, "381": 192, "382": 1790, "383": 2903, "384": 1078, "385": 10536, "386": 18182, "387": 8613, "388": 1097, "389": 7},

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217 "sampleB": {}

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218 }

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219 */

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220

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221

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222 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////

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223 //

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224 // Main

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225 //

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226 ///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////

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227 /**

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228 * Disables/enables buttons in datatable.

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229 */

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230 var updateButtonState = function(){

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231 $("#display-spl-lengths").removeClass( "disabled" );

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232 if( $('input[id^="filterBySample-chk-"]:checked').length == 0 ){

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233 $("#display-spl-lengths").addClass( "disabled" );

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234 }

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235 $("#display-after-spl-lengths").removeClass( "disabled" );

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236 if( $('input[id^="filterBySample-chk-"]:checked').length == 0 ){

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237 $("#display-after-spl-lengths").addClass( "disabled" );

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238 }

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239 }

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240

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241 /**

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242 * Draws for the selected sample(s) the line chart that represents the number of sequences by sequence length.

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243 */

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244 var setLengthsGraph = function(lengths_by_sample,title){

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245 var selected_series = new Array();

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246 $('input[id^="filterBySample-chk-"]').each( function(){

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247 if( $(this).is(':checked')){

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248 var sample_name = $(this).prop('id').substring(19, $(this).prop('id').length) ;

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249 // Find min and max for the sample

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250 var min_length = null ;

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251 var max_length = null ;

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252 for(seq_length in lengths_by_sample[sample_name]){

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253 if( max_length === null ){

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254 min_length = parseInt(seq_length) ;

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255 max_length = parseInt(seq_length) ;

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256 } else {

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257 min_length = Math.min( min_length, parseInt(seq_length) );

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258 max_length = Math.max( max_length, parseInt(seq_length) );

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259 }

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260 }

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261 // Complete data

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262 var sample_data = new Array();

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263 if( max_length !== null ){

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264 for( var curr_length = min_length ; curr_length <= max_length ; curr_length++ ){

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265 if( lengths_by_sample[sample_name].hasOwnProperty(curr_length.toString()) ){

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266 sample_data.push([

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267 curr_length,

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268 lengths_by_sample[sample_name][curr_length.toString()]

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269 ]);

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270 } else {

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271 sample_data.push( [curr_length, null] );

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272 }

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273 }

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274 }

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275 // Add serie

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276 selected_series.push({

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277 "name": sample_name,

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278 "data": sample_data

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279 });

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280 }

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281 });

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282 // Draw chart

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283 $('#lengths-chart').highcharts( lineplot_param(title, "Length", "Nb sequences", null, selected_series) );

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284 }

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285

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286 /**

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287 * Draws the bar chart that represents the total number of sequences after each filter.

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288 */

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289 var summaryLoad = function(){

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290 var global_data = new Array();

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291 for( var spl_name in filters_by_sample ){

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292 var nb_by_step = filters_by_sample[spl_name] ;

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293 for( var step_idx = 0 ; step_idx < filters_by_sample[spl_name].length ; step_idx++ ){

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294 if( global_data.length < step_idx+1 ){

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295 global_data.push(0);

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296 }

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297 global_data[step_idx] += nb_by_step[step_idx] ;

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298 }

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299 }

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300 var global_series = [{ name: 'All samples', data: global_data }];

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301 $('#filter-summary').highcharts( histogram_param('Filtering summary', 'Nb sequences', filters_categories, global_series, 'seq') );

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302 }

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303

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304 /**

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305 * Set the table that represents by sample the number of sequences after each filter.

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306 */

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307 var sampleDetailsLoad = function(){

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308 // Table titles

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309 var titles = [ '<input id="filterBySample-check-all" type="checkbox" value="1">', "Samples" ];

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310 titles.push( '% kept' );

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311 for( var rank = 0 ; rank < filters_categories.length ; rank++ ){

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312 titles.push( filters_categories[rank] );

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313 }

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314 $('#filterBySample-table thead').append( '<tr><th>' + titles.join("</th><th>") + '</th></tr>' );

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315 $('#filterBySample-table .title').attr( "colspan", titles.length );

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316 $('#filterBySample-table tfoot th').each(function(){

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317 $(this).attr( "colspan", titles.length );

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318 });

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319

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320 // Table data

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321 for( var sample_name in filters_by_sample ){

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322 var sample_data = ['<input id="filterBySample-chk-' + sample_name + '" type="checkbox" value="1">', sample_name] ;

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323 var prct_kept = filters_by_sample[sample_name][filters_categories.length-1]/filters_by_sample[sample_name][0]*100

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324 sample_data.push( numberDisplay(prct_kept) );

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325 for( var idx = 0 ; idx < filters_by_sample[sample_name].length ; idx++){

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326 sample_data.push( numberDisplay(filters_by_sample[sample_name][idx]) );

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327 }

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328 // Add row data

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329 $('#filterBySample-table tbody').append( '<tr><td>' + sample_data.join("</td><td>") + '</td></tr>' );

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330 }

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331

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332 // Check all management

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333 $('#filterBySample-check-all').on('change', function (e) { // Manage check all

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334 if( $(this).is(':checked') ){

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335 $('input[id^="filterBySample-chk-"]').each( function(){

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336 $(this).prop( 'checked', true );

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337 });

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338 } else {

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339 $('input[id^="filterBySample-chk-"]').each( function(){

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340 $(this).prop( 'checked', false );

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341 });

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342 }

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343 });

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344 $('input[id^="filterBySample-chk-"]').on('change', function (e) { // Uncheck select all when uncheck one sample

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345 if( !$(this).is(':checked') && $('#filterBySample-check-all').is(':checked') ){

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346 $('#filterBySample-check-all').prop( 'checked', false );

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347 }

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348 });

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349

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350 // Buttons enable/disable management

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351 $('input[id^="filterBySample-check-all"]').on( 'change', updateButtonState );

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352 $('input[id^="filterBySample-chk-"]').on( 'change', updateButtonState );

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353

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354 // Datatable

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355 $('#filterBySample-table').DataTable({

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356 "sDom": '<"top"<"#filterBySample-csv-export"><"clear">lf>rt<"bottom"ip><"clear">',

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357 'order': [[1, 'asc']],

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358 'columnDefs': [{

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359 'targets': [0],

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360 'orderable': false

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361 }],

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362 "fnDrawCallback": updateButtonState

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363 });

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364 // Datatable export

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365 $('#filterBySample-csv-export').html( '<button class="btn btn-primary"><span class="glyphicon glyphicon-open-file" aria-hidden="true">CSV</span></button>' );

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366 $('#filterBySample-csv-export').addClass( 'dataTables_filter' );

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367 $('#filterBySample-csv-export').datatableExport({

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368 'table_id': "filterBySample-table",

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369 'omitted_columns': [0]

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370 });

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371

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372 // Add modal listener

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373 $('#lengths-modal').on('shown.bs.modal', function (event) {

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374 var button = $(event.relatedTarget); // Button that triggered the modal

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375 var data_type = button.data('whatever');

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376 if( data_type == "before-process" ){

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377 setLengthsGraph(before_lengths_by_sample,"Amplicon length distribution before trimming and filtering");

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378 } else {

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379 setLengthsGraph(after_lengths_by_sample,"Preprocessed Amplicon Length distribution");

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380 }

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381 });

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382 }

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383

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384 $(function() {

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385 // Remove alert

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386 $('#js-alert').remove();

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387 $('#content').removeClass("hidden");

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388

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389 // Display summary

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390 summaryLoad();

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391

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392 // Display data by sample

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393 sampleDetailsLoad();

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394 });

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395 </script>

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396 </head>

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397 <body>

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398

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399 <p id="js-alert" class="alert alert-warning">

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400 javascript is needed to display data.<br />

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401 If you try to view this data on galaxy please contact your administrator to authorise javascript or download the file to view.

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402 </p>

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403

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404

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405 <div id="content" class="hidden">

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406 <div id="filter-summary"></div>

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407 <div id="filter-log">

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408 <table id="filterBySample-table" class="table table-striped">

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409 <thead>

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410 <tr>

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411 <th class="title">Filtering by sample</th>

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412 </tr>

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413 </thead>

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414 <tbody></tbody>

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415 <tfoot>

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416 <tr>

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417 <th>

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418 <span class="table-action">With selection:</span>

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419 <button id="display-spl-lengths" class="btn btn-primary table-action fusion-right disabled" data-toggle="modal" data-target="#lengths-modal" data-whatever="before-process">Display amplicon lengths </button>

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420 <button id="display-after-spl-lengths" class="btn btn-primary table-action disabled" data-toggle="modal" data-target="#lengths-modal" data-whatever="after-process">Display preprocessed amplicon lengths</button>

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421 </th>

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422 </tr>

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423 </tfoot>

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424 </table>

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425 </div>

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426 </div>

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427

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428

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429 <div class="modal" id="lengths-modal" tabindex="-1" role="dialog" aria-hidden="true">

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430 <div class="modal-dialog modal-lg">

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431 <div class="modal-content">

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432 <div class="modal-header">

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433 <button type="button" class="close" data-dismiss="modal" aria-label="Close"><span aria-hidden="true">×</span></button>

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434 <h4 class="modal-title">Amplicons lengths</h4>

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435 </div>

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436 <div class="modal-body">

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437 <div id="lengths-chart"></div>

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438 </div>

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439 <div class="modal-footer">

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440 <button type="button" class="btn btn-default" data-dismiss="modal">Close</button>

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441 </div>

76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty

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442 </div>

76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty

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443 </div>

76c750c5f0d1 planemo upload for repository https://github.com/oinizan/FROGS-wrappers commit 0b900a51e220ce6f17c1e76292c06a5f4d934055-dirty

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444 </div>

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445 </body>

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446 </html>

Mercurial > repos > frogs > frogs_2_0_0

annotate test-data/references/01-prepro.html @ 0:76c750c5f0d1 draft default tip