Mercurial > repos > frogs > frogs_3_1_0
comparison test-data/references/13-tree-mafft.log @ 0:59bc96331073 draft default tip
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author | frogs |
---|---|
date | Thu, 28 Feb 2019 10:14:49 -0500 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:59bc96331073 |
---|---|
1 ## Application | |
2 Software :/home/maria/workspace/git/FROGS/FROGS_master/test/../app/tree.py (version : 3.1) | |
3 Command : /home/maria/workspace/git/FROGS/FROGS_master/test/../app/tree.py --nb-cpus 4 --input-otu res/04-filters.fasta --biomfile res/06-affiliation.biom --out-tree res/13-tree-mafft.nwk --html res/13-tree-mafft.html --log-file res/13-tree-mafft.log | |
4 | |
5 Number of input OTUs sequences: 86 | |
6 | |
7 ######################################################################################################## | |
8 # Mafft multiple alignment. (mafft version : v7.407) | |
9 Command: | |
10 mafft --maxiterate 1000 --globalpair --thread 4 res/04-filters.fasta > res/1550052877.76_4235_mafft_aligned.fasta 2> res/1550052877.76_4235_mafft.stderr | |
11 | |
12 Execution: | |
13 start: 13 Feb 2019 11:14:37 | |
14 end: 13 Feb 2019 11:15:14 | |
15 | |
16 ######################################################################################################## | |
17 # reconstruction a phylogenetic tree (FastTree version : 2.1.10) | |
18 Command: | |
19 FastTree -nt -gtr res/1550052877.76_4235_mafft_aligned.fasta > res/1550052877.76_4235_fasttree.nwk 2> res/1550052877.76_4235_fasttree.stderr | |
20 | |
21 Execution: | |
22 start: 13 Feb 2019 11:15:14 | |
23 end: 13 Feb 2019 11:15:19 | |
24 | |
25 ######################################################################################################## | |
26 # root newick tree with phangorn R package midpoint function. (root_tree.R version : 1.0.0) | |
27 Command: | |
28 root_tree.R res/1550052877.76_4235_fasttree.nwk res/13-tree-mafft.nwk | |
29 | |
30 Execution: | |
31 start: 13 Feb 2019 11:15:23 | |
32 end: 13 Feb 2019 11:15:25 | |
33 |