Mercurial > repos > frogs > frogs_3_1_0
comparison test-data/references/normalisation.log @ 0:59bc96331073 draft default tip
planemo upload for repository https://github.com/geraldinepascal/FROGS-wrappers/tree/v3.1.0 commit 08296fc88e3e938c482c631bd515b3b7a0499647
author | frogs |
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date | Thu, 28 Feb 2019 10:14:49 -0500 |
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-1:000000000000 | 0:59bc96331073 |
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1 ## Application | |
2 Software: normalisation.py (version: 3.1) | |
3 Command: ./../app/normalisation.py -n 100 -f res/04-filters.fasta -i res/06-affiliation.biom -s res/normalisation_report.html -l res/normalisation.log | |
4 | |
5 Application start: 13 Feb 2019 11:24:00 | |
6 | |
7 #Normalisation calculation | |
8 start: 13 Feb 2019 11:24:00 | |
9 ######################################################################################################## | |
10 # Random sampling in each sample. (biomTools.py version : 0.10.1) | |
11 Command: | |
12 biomTools.py sampling --nb-sampled 100 --input-file res/06-affiliation.biom --output-file abundance.biom | |
13 | |
14 Execution: | |
15 start: 13 Feb 2019 11:24:00 | |
16 end: 13 Feb 2019 11:24:00 | |
17 | |
18 end: 13 Feb 2019 11:24:00 | |
19 | |
20 ######################################################################################################## | |
21 # Update fasta file based on sequence in biom file (biomFastaUpdate.py version : 1.0.1) | |
22 Command: | |
23 biomFastaUpdate.py --input-biom abundance.biom --input-fasta res/04-filters.fasta --output-file sequence.fasta --log 1550053440.26_4588_tmp_fasta_update.log | |
24 | |
25 Execution: | |
26 start: 13 Feb 2019 11:24:00 | |
27 end: 13 Feb 2019 11:24:00 | |
28 | |
29 | |
30 #Summarise | |
31 start: 13 Feb 2019 11:24:00 | |
32 end: 13 Feb 2019 11:24:00 | |
33 | |
34 Application end: 13 Feb 2019 11:24:00 |